Table 2.
Contigs including more reads in the F. hepatica NEJ ESTs assembly
| Contig | Length | Reads | Signal_P* | TMHMM** | Description*** | Distribution | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FHE | TRE | CES | TUR | CND | LTZ | ECZ | DTS | ||||||
| FHC00023 | 824 | 57 | SPep | 0 | Similar to FHA01510_1 | X | |||||||
| FHC00067 | 483 | 30 | SPep | 1 | No hit | ||||||||
| FHC00049 | 1130 | 27 | - | 0 | cathepsin B3 | X | X | X | X | X | X | X | X |
| FHC00068 | 615 | 21 | - | 0 | Similar to AT006824 C. sinensis clone | X | x | ||||||
| FHC00138 | 876 | 18 | - | 0 | Thioredoxin peroxidise | X | X | X | X | X | X | X | X |
| FHC00005 | 792 | 16 | SAnc | 3 | Similar to AT009818 C. sinensis clone | X | x | ||||||
| FHC00024 | 1064 | 14 | SPep | 0 | cathepsin L3 | X | X | X | X | X | X | X | X |
| FHC00014 | 612 | 12 | SAnc | 2 | Similar to AT009818 C. sinensis clone | X | x | ||||||
| FHC00006 | 501 | 12 | SPep | 1 | Similar to AT009816 C. sinensis clone | X | x | ||||||
| FHC00095 | 699 | 11 | - | 0 | Similar to FhAE00302 | X | |||||||
| FHC00061 | 819 | 10 | SAnc | 3 | Similar to AT008757 C. sinensis clone | X | x | ||||||
| FHC00091 | 443 | 10 | - | 0 | cysteine-rich intestinal protein | X | x | x | x | x | x | x | x |
| FHC00340 | 362 | 9 | - | 0 | Similar to FHA01532_1 | X | |||||||
| FHC00174 | 413 | 9 | - | 0 | Similar to OvAE2228 O. viverrini | X | x | x | x | x | |||
| FHC00054 | 610 | 8 | - | 0 | pro-cathepsin B1 | X | X | X | X | X | X | X | X |
| FHC00376 | 473 | 8 | SAnc | 1 | FN5 protein | X | x | x | x | x | x | ||
| FHC00101 | 564 | 7 | - | 0 | Peptidyl-prolyl cis-trans isomerase | X | X | X | X | X | X | X | X |
| FHC00017 | 1131 | 7 | SPep | 0 | pro-cathepsin B2 | X | X | X | X | X | X | X | X |
| FHC00175 | 930 | 7 | - | 0 | Ribosomal protein S2 | X | X | X | X | X | X | X | X |
| FHC00013 | 252 | 7 | - | 0 | Ribosomal protein S29 | X | x | x | x | x | x | x | x |
| FHC00187 | 282 | 7 | - | 0 | Calcium-binding protein | X | x | x | x | x | x | ||
| FHC00030 | 680 | 6 | SPep | 0 | Cellular nucleic acid-binding protein | X | x | x | x | x | x | x | x |
| FHC00018 | 289 | 6 | - | 0 | Similar to FhAE00481 | X | x | ||||||
| FHC00038 | 416 | 6 | SAnc | 1 | no hit | ||||||||
| FHC00172 | 476 | 6 | SPep | 0 | Similar to FhAE00307 | X | x | ||||||
* Signal P results indicating prediction of a signal peptide or a signal anchor
** Number of predicted transmembrane domains as predicted by THMMM is indicated
*** Presence of a putatively relevant blast hit in different taxons is indicated. Hits below e-10 represented by a lowercase x, under e-50 by uppercase X, and e-100 in bold X.
Columns headings are FHE (F. hepatica adult stage), TRE (other trematoda), CES (cestoda), TUR (turbellaria), CND (cnidaria), LTZ (lophotrochozoa), ECZ (ecdysozoa), DTS (deuterostomia)