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. 2010 Apr 6;11:170. doi: 10.1186/1471-2105-11-170

Table 4.

Genes common to significance and SVM analyses

SVM Gene log2(Fold Change) Description (if available) 8 hrs 24 hrs
CYR61 -1.51 cysteine-rich, angiogenic inducer, 61 + +
SOCS3 -1.06 suppressor of cytokine signaling 3 - +
AK024238 -1.32 mRNA, possibly cadherin 6, type 2 (CDH6) + +
AA768672 -1.47 mRNA, possibly LSM14A + +
THC2348879 -1.22 + -
THC2313287 -2.74 + +
IER2 -1.64 immediate early response 2 + +
ZFP36 -1.74 zinc finger protein 36 + +
FOS -3.47 v-fos FBJ murine osteosarcoma viral oncogene homolog + +
NFKBIE 1.08 nuclear factor of kapppa light polypeptide gene enhancer in B-cells inhibitor + +
AT_nC_3 -1.32 + -
CTGF -1.43 connective tissue growth factor + -
AF159295 -1.89 mRNA, MAP/microtubule affinity-regulating kinase 3 (MARK3) + +
JUN -1.74 v-jun sarcoma virus 17 oncogene homolog (avian) + +
FOSB -2.18 FBJ murien osteosarcoma viral oncogene homolog B + +
EGR1 -3.18 early growth response 1 + +
HP1BP3 -1.00 heterochromatin protein 1, binding protein 3 + -
DUSP1 -1.79 dual specificity phosphatase 1 + +
ABCC3 1.38 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 + +
FOXC1 -1.15 forkhead box C1 - +
SFRS5 -1.47 splicing factor, arginine/serine-rich 5 + +
DB363693 -1.43 + -
THC2343678 -1.47 + +
A_24_P161068 -1.09 - +

Genes are listed in order of importance in the SVM analysis. The fold change in each gene is the average fold change in gene expression including both the 8 and 24 hour data. In the last two columns, a "+" indicates that the gene was found in both the Significance and SVM Analyses at 8 or 24 hours, respectively. A "-" indicates that the gene was not found in the results in both analyses at 8 or 24 hours. Genes through sfrs5 are among the top 35 and through the end of the list are in the top 43.