Table 5. Transposed Arabidopsis genes without a likely “parent” gene.

GENE ID	TAIR v. 9 gene description	Repeat size (bp)	repeat type	repeat sequence in A. lyrata orthologous region	repeat sequence identity
AT2G25450	encodes a protein whose sequence is similar to ACC oxidase	120	direct	no	3′ of the gene
AT3G10430	F-box family protein	31	direct	yes	unknown protein (AT1G18740) mRNA
AT3G18120	F-box family protein-related	30	direct	yes	receptor for activated C kinase
AT4G26870	aspartyl-tRNA synthetase, putative	287	direct	yes	3′ of the gene
AT4G33900	kelch repeat-containing F-box family protein	36	direct	yes	unknown protein
AT5G12280	RNA binding	66	direct	yes	unknown protein
AT5G52090	tRNA-splicing endonuclease positive effector-related	116	direct	yes	DRE/CRT-binding factor 1
AT5G57890	anthranilate synthase beta subunit, putative	35	direct	yes	F-box protein
AT5G58120	disease resistance protein (TIR-NBS-LRR class), putative	80	direct	yes	ATPase activator/chaperone binding, RNA recognition motif (RRM)-containing protein

Eight out of the nine genes have flanking sequence which corresponds to sequence in the orthologous region of A. lyrata. The sequence identity of all repeats is gene-like, not repetitive or transposon-associated.