Table 3. SNV Analysis.

	Illumina Tumor*			Illumina Normal*			454 Tumor*
Supporting Read(s)	No of SNVs	Known SNPs		No of SNVs	Known SNPs		No of SNVs	Known SNPs
		Count	%		Count	%		Count	%
= 2 reads	599,783	508,936	84.85	624,928	548,185	87.72	929,217	629,043	67.70
= 3 reads	347,027	317,641	91.53	330,330	305,757	92.56	463,075	355,305	76.73
= 4 reads	198,605	185,383	93.34	164,700	154,985	94.10	243,543	189,916	77.98
= 5 reads	109,543	103,455	94.44	76,707	72,825	94.94	126,668	96,046	75.82
= 6 reads	57,509	54,671	95.07	34,417	32,772	95.22	66,129	47,581	71.95
= 7 reads	29,960	28,588	95.42	14,758	13,947	94.50	36,329	23,620	65.02

^*The depth is slightly different for each sequencing column accounting for differences in total SNVs.