Table 2.
Allele frequency | T | Not T | Total | Transmission frequency | TDT χ2 | P value | |
---|---|---|---|---|---|---|---|
SNP haloptype allelea | |||||||
A. GACCGA | 0.454 | 117 | 141 | 258 | 0.453 | 2.23 | >0.05 |
B. AGGCGC | 0.278 | 94 | 118 | 212 | 0.443 | 2.72 | >0.05 |
C. AGCTAC | 0.184 | 100 | 60 | 160 | 0.625 | 10.00 | 0.0016 |
D. AGGCGA | 0.030 | 21 | 17 | 38 | 0.553 | 0.42 | >0.05 |
E. AGCTAA | 0.021 | 13 | 10 | 23 | 0.565 | 0.39 | >0.05 |
All others | 0.032 | ||||||
Haloptype allele/D19S884 allele | |||||||
A/11 | 0.067 | 33 | 41 | 74 | 0.446 | 0.86 | >0.05 |
A/13 | 0.192 | 86 | 81 | 167 | 0.515 | 0.15 | >0.05 |
B/7 | 0.107 | 54 | 54 | 108 | 0.500 | 0 | >0.05 |
B/8 | 0.027 | 16 | 19 | 35 | 0.457 | 0.26 | >0.05 |
B/9 | 0.092 | 41 | 53 | 94 | 0.436 | 1.53 | >0.05 |
C/8 | 0.138 | 79 | 48 | 127 | 0.622 | 7.57 | 0.0059 |
C/9 | 0.025 | 17 | 11 | 28 | 0.607 | 1.29 | >0.05 |
T, Number of transmissions in TDT analysis.
Order of SNPs in haplotype: rs3745393, rs2303169, rs17160147, rs17202517, rs73503752, and rs28525575.