TABLE 1.
Biological processes that are overrepresented relative to chance expectation and showing differentially expressed genes at the juvenile stage between control and selected line of Laval River brook charr
| Biological process | Reference list (n = 295) | List of differentially expressed genes (n = 52) | Expected frequency in the set of differentially expressed genes | Genes representation (over +/under −) | Associated P value |
|---|---|---|---|---|---|
| Immunity and defense | 59 | 3 | 11.11 | — | 3.20 × 10−03 |
| Nucleoside, nucleotide, and nucleic acid metabolism | 80 | 9 | 15.06 | — | 2.70 × 10−02 |
| G-protein-mediated signaling | 7 | 4 | 1.32 | + | 4.38 × 10−02 |
| Other coenzyme and prosthetic group metabolism | 2 | 1 | 0.38 | + | 4.51 × 10−02 |
| Protein metabolism and modification | 130 | 35 | 24.48 | + | 4.59 × 10−02 |
The reference list was built using the list of the analyzed transcript (n = 3750) that belonged to the five significantly over- and underrepresented biological processes.