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Log-ratios for three SNPs tested in different DNA proportions of two control HapMap samples (NA12892:NA19092, from 0:100 to 100:0) on the Illumina ASE Beadarray. From top to bottom, we see SNPs that exhibit extreme allelic imbalance, intermediate allelic imbalance and no allelic imbalance, respectively. The first two examples are true positives while the last one is a true negative for our sensitivity and specificity analysis.
