Table 1.

Benchmark comparison on 156 yeast ChIP-chip datasets

Motif finder	Number of successes top 1
AlignACE	16
MEME	35
MEME-c	49
Kellis	50
Converge	56
PRIORITY-C	69
MD-scan	54
PRIORITY-DC	78
ERMIT	75
cERMIT	87

Comparison of cERMIT with other motif finders on the yeast dataset of 156 ChIP-chip experimental conditions corresponding to 80 unique transcription factors (adapted after [21]).