Table 8.
Pairwise comparisons between FLU and HIVb, HIVw, JTT, LG models.
| LogLK/site | #M1 > M2 | #M2 > M1 | |||
|---|---|---|---|---|---|
| M1 | M2 | M1 > M2 | (p < .05) | (p < .05) | |
| FLU (-F) | HIVb (-F) | 0.14 | 696 | 484 | 49 |
| FLU (-F) | HIVw (-F) | 0.19 | 843 | 689 | 46 |
| FLU (-F) | JTT (-F) | 0.17 | 926 | 731 | 10 |
| FLU (-F) | LG (-F) | 0.26 | 971 | 907 | 6 |
| FLU (+F) | HIVb (+F) | 0.12 | 674 | 437 | 89 |
| FLU (+F) | HIVw (+F) | 0.16 | 734 | 561 | 84 |
| FLU (+F) | JTT (+F) | 0.13 | 958 | 755 | 3 |
| FLU (+F) | LG (+F) | 0.23 | 988 | 954 | 0 |
LogLK/site: the log likelihood difference between trees inferred using M1 and M2; a positive (negative) value means M1 is better (worse) than M2. #M1 > M2: the number of alignments among 992 alignments where M1 results in better likelihood value than M2. #M1 > M2 (p < 0.05): the number of alignments where the Kishino-Hasegawa test indicates that M1 is significantly better than M2. #M2 > M1 (p < 0.05): the same as #M1 > M2, but now M2 is significantly better than M1.