Table 5.
Annotation of genes in the B. fragilis 638R Bfgi1 insertion.
| ORF | Protein Length |
Putative function | % Id/Sima | Organismb | Accession no.c |
|---|---|---|---|---|---|
| 1 | 411 | Integrase protein | 59/74 (411) | B. fragilis YCH46 | AAS83518.1 |
| 2 | 119 | Hypothetical protein | 42/64 (114) | B. thetaiotaomicron | AA077037.1 |
| 3 | 162 | Ctn042 | 37/59 (112) | B. fragilis YCH46 | AAS83514.1 |
| 4 | 1828 | DNA Methylase (BmhA) | 57/71 (1339) | B. fragilis YCH46 | AAS83508.1 |
| 5 | 143 | Hypothetical protein | 41/56 (121) | B. thetaiotaomicron | AA077432.1 |
| 6 | 709 | Excisionase | 57/72 (704) | B. fragilis YCH46 | AAS83511.1 |
| 7 | 464 | Hypothetical protein | 41/57 (482) | B. thetaiotaomicron | AA075210.1 |
| 8 | 260 | TetR/AcrR family | 32/58 (204) | B. thetaiotaomicron | AA075614.1 |
| 9 | 161 | Hypothetical protein | 48/71 (108) | P. gingivalis W83 | AA075614.1 |
| 10 | 780 | Putative TonB OM Receptor | 63/78 (780) | B. fragilis YCH46 | BAD47377.1 |
| 11 | 412 | Hypothetical protein | 56/73 (398) | B. fragilis YCH46 | CAH06331.1 |
| 12 | 187 | Putative Ni-Co-Cd resistance protein | 29/42 (110) | Syntrophus aciditrophicus SB | ABC78121.1 |
| 13 | 604 | ABC Transporter | 41/61 (570) | B. thetaiotaomicron | AA075616.1 |
| 14 | 593 | ABC Transporter | 43/63 (591) | B. thetaiotaomicron | AA075615.1 |
| 15 | 172 | RteC | 56/76 (80) | B. thetaiotaomicron | AAA22922.1 |
| 16 | 129 | Peptidase S51 | 44/59 (100) | Listeria monocytogenes | AAT03167.1 |
| 17 | 114 | Hypothetical protein | 69/79 (73) | P. gingivalis W83 | AAQ66123.1 |
| 18 | 138 | Hypothetical protein | 34/53 (135) | B. thetaiotaomicron | AA077558.1 |
| 19 | 431 | C10 protease | 26/43 (454) | B. thetaiotaomicron | AA077558.1 |
| 20 | 112 | Hypothetical protein | 27/72 (80) | Polaribacter irgensii | A4BZ61 |
| 21 | 512 | ECF type σ-factor | 31/50 (502) | B. thetaiotaomicron | AA077884.1 |
| 22 | 148 | Hypothetical protein | 43/58 (46) | Campylobacter upsaliensis | EAL52724.1 |
| 23 | 671 | MobC | 51/91 (660) | B. fragilis YCH46 | AAS83500.1 |
| 24 | 408 | MobB | 53/71 (348) | B. fragilis YCH46 | AAS83499.1 |
| 25 | 137 | MobA | 46/66 (136) | B. fragilis YCH46 | AAS83498.1 |
| 26 | 260 | TraA | 53/71 (246) | B. fragilis YCH46 | AAG17826.1 |
| 27 | 142 | TraB | 34/51 (133) | B. fragilis YCH46 | BAD48110.1 |
| 28 | 135 | TraC | 34/55 (63) | B. fragilis YCH46 | AAS83495.1 |
| 29 | 271 | TraA | 37/53 (251) | B. fragilis YCH46 | BAD49765.1 |
| 30 | 196 | TraD | 26/37 (182) | B. thetaiotaomicron | AA077408.1 |
| 31 | 123 | TraE | 73/79 (78) | B. fragilis YCH46 | BAD48110.1 |
| 32 | 126 | TraF | 56/66 (87) | B. fragilis YCH46 | AAS83492.1 |
| 33 | 828 | TraG | 72/83 (829) | B. fragilis YCH46 | BAD466872.1 |
| 34 | 209 | TraI | 65/80 (209) | B. fragilis YCH46 | BAD46870.1 |
| 35 | 366 | TraJ | 70/86 (303) | B. fragilis YCH46 | AAS83488.1 |
| 36 | 207 | TraK | 75/84 (207) | B. fragilis YCH46 | AAS83487.1 |
| 37 | 110 | TraL | 37/58 (72) | B. fragilis YCH46 | BAD48102.1 |
| 38 | 454 | TraM | 49/64 (439) | B. fragilis YCH46 | BAD46866.1 |
| 39 | 310 | TraN | 70/84 (300) | B. fragilis YCH46 | AAG17839.1 |
| 40 | 194 | TraO | 55/72 (177) | B. fragilis YCH46 | BAD46864.1 |
| 41 | 292 | TraP | 52/67 (292) | B. fragilis YCH46 | BAD46863.1 |
| 42 | 153 | TraQ | 60/76 (139) | B. fragilis YCH46 | BAD48097.1 |
| 43 | 171 | Lysozyme | 53/73 (147) | B. fragilis YCH46 | BAD46861.1 |
| 44 | 116 | DNA Binding protein | 75/80 (103) | P. gingivalis W83 | AAQ66295.1 |
| 45 | 530 | Hemerythrin | 41/62 (508) | Alkaliphilus metalliredigens | EA081668.1 |
| 46 | 426 | Ctn003 | 41/57 (441) | B. fragilis YCH46 | BAD46856.1 |
| 47 | 176 | Anti-restriction protein | 52/71 (175) | B. fragilis YCH46 | BAD48093.1 |
| 48 | 138 | Ctn002 | 48/62 (115) | B. fragilis YCH46 | BAD46855.1 |
| 49 | 200 | Hypothetical protein | 74/77 (31) | B. fragilis YCH46 | BAD48092.1 |
a Percentage identity/similarity, the number in parenthesis is the number of amino acids used in the calculations.
b The organism encoding the B. fragilis 638R gene homologue.
cAccession number of the highest scoring BLAST hit with an annotated function.