Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.
Comparison of performance with E. coli CFT073 - S. typhimurium pair.
| length (bp) | Sn (%) | Sp (%) | time (s) | memory (MB) | |
|---|---|---|---|---|---|
| Blastz (default) | 4,952,433 | 83.0 | 61.2 | 73 | 348 |
| Blastz (T = 2 C = 2) | 3,330,116 | 79.5 | 84.2 | 22 | 347 |
| AVID | 3,263,793 | 78.1 | 73.8 | 178 | 2365 |
| NUCmer | 219,651 | 4.9 | 69.7 | 27 | 90 |
| Cgaln (-X4000) | 3,456,219 | 78.7 | 81.0 | 11 | 167 |
Comparison of the performance of Cgaln with other programs for E. coli CFT073 vs. S. typhimurium. "-X4000" of Cgaln indicates the threshold Tcol was set at 4000.
