Table 2. Editing enriched traces—higher quality.
Reference genome version | G-to-A | C-to-T | A-to-G | T-to-C | Other |
anoGam1 | 2836 | 2830 | 2907 | 3098 | 440 |
calJac1 | 3012 | 3362 | 2735 | 3133 | 145 |
canFam2 | 3170 | 3777 | 3270 | 3027 | 212 |
dm3 | 1 | 1 | 0 | 1 | 0 |
galGal3 | 1290 | 878 | 1026 | 1760 | 48 |
hg18 | 17719(82) | 16778(72) | 13701(188) | 15301(419) | 700(8) |
mm9 | 1801(219) | 1644(272) | 1346(276) | 1411(346) | 76(11) |
panTro2 | 3485 | 3120 | 2918 | 4046 | 240 |
fr2 | 467 | 449 | 390 | 482 | 45 |
xenTro2 | 1483(202) | 1574(262) | 1461(1289) | 1631(1066) | 269(28) |
Number of traces by mismatch type with two or more mismatches at or above a quality threshold of phred 40, spanning 100bp or more. All mismatches belong to runs of three consecutive mismatches of the same type of any quality. The number of traces from the next largest substitution type, or the largest substitution type if it is not one of A-to-G, T-to-C, G-to-A, or C-to-T, is shown in the “other” column for comparison. The numbers in parentheses indicate traces of RNA origin. See Materials and Methods for more details.