Table 1. Microsatellite markers for the known 20 loci reported to be associated with ADCC.
Gene | Marker | Primer (F,R) | PCR product size (bp) |
---|---|---|---|
FOXE3 |
D1S2720 |
F: AGCTACAAAGTGCTTTACTGACA |
235-245 |
R: AATGGTCCAGGCAAAGT |
|||
D1S232 |
F: GAGCAAGACTCTCTGTCCCC |
184-202 |
|
R: CCATGTTCAAGGGTCAACTG |
|||
GJA8 |
D1S498 |
F: TTGCTGAAGGGACATAGTG |
183-205 |
R:TGCTGGGTTATATCCAATATC |
|||
D1S507 |
F: AGGGGATCTTGGCACTTGG |
183-203 |
|
R:CTCTAGGGTTTCTGGAAAATGCTG |
|||
CRYGC |
D2S1782 |
F: CTGACTTCACTGCTGTAATTGC |
119-135 |
CRYGD |
R: AAAGGCAAAGAAAGGGACTG |
||
D2S2208 |
F: CTATTTGTAAACATGCGGGA |
164-196 |
|
R: AGCTAAGTACCTGCTCAGGAAA |
|||
CRYGS |
D3S1746 |
F: TCCCCTTTGAAAGTCCTACC |
225-253 |
R: TCCCTGGGTGAAAATGAGTA |
|||
D3S1594 |
F: CTGGNCACAGAGGGTC |
266-334 |
|
R: GCCACTTTTGCAGAGAACA |
|||
BFSP2 |
D3S3612 |
F: TCCTTTGTTAGGCTCAATTTT |
176-196 |
R: TGCCCAGTTTTAGTCCA |
|||
D3S1764 |
F: TCCCCTTTGAAAGTCCTACC |
225-253 |
|
R: TCCCTGGGTGAAAATGAGTA |
|||
GCNT2 |
D6S1717 |
F: GGGATGTTGAGAATGTTGTC |
110-124 |
R: GGGGGCTCTATCTCTAAAATT |
|||
D6S304 |
F: TTCCACTCTGCTCCAGACAG |
228-250 |
|
R: TTGAAAGTTTGAGAAGCACTTGTTA |
|||
EYA1 |
D8S271 |
F: AGATGACCTGGATGAGAGTG |
256-271 |
R: AACAAACTTGCTTATGAGTGTTACT |
|||
D8S1840 |
F: TCCAGCCTGCATGACAGAGC |
224-240 |
|
R: TGTAACACTCACCGCGAGGG |
|||
PITX3 |
D10S192 |
F: TTATACTAGGAAACAAGGCTTAC |
179-198 |
R: GGGCTTAAATGAATGAGCAC |
|||
D10S1760 |
F: GCGAGACTCCATCTCCATAG |
112-155 |
|
R: CCATATAGTGGGTGGCTTAAA |
|||
PAX6 |
D11S904 |
F: ATGACAAGCAATCCTTGAGC |
185-201 |
R: CTGTGTTATATCCCTAAAGTGGTGA |
|||
D11S935 |
F: TACTAACCAAAAGAGTTGGGG |
196-208 |
|
R: CTATCATTCAGAAAATGTTGGC |
|||
CRYAB |
D11S2000 |
F: AGTAGAGAACAAAACACTGTGGC |
199-235 |
R: TTTGAAGATCTGTGAAATGTGC |
|||
D11S1998 |
F: AGCCATCAACTAGCTTTCCC |
129-165 |
|
R: GGGAGGCACCAACAGATG |
|||
MIP |
D12S1632 |
F: GCCTAATCAAGATGTCACCA |
216-226 |
R: GCTAGGGAGCCAATTCA |
|||
D12S1691 |
F: GGTAAACACTGAGACACGCC |
194-230 |
|
R: TGATGACNCAGAAGTTGAGC |
|||
GJA3 |
D13S1275 |
F: ATCACTTGAATAAGAAGCCATTTG |
180-214 |
R: CCAGCATGACCTTTACCAG |
|||
D13S175 |
F: TATTGGATACTTGAATCTGCTG |
101-113 |
|
R: TGCATCACCTCACATAGGTTA |
|||
CHX10 |
D14S71 |
F: TGCACCAATGCCTCCT |
191-211 |
R: CCCGGCCAGAAATGCT |
|||
D14S81 |
F: CAGAGAAATGAGTTGAGTATGGTT |
175-209 |
|
R: CAACAGAGCAGGACCCTTTC |
|||
HSF4 |
D16S3067 |
F: GCCACCTCACACTAGCCTG |
138-152 |
R: TCACTCAAAATGGAGTCACTCTG |
|||
D16S421 |
F: ACATGAACCGATTGGACTGA |
206-216 |
|
R: CCGTTCCCTATATTTCCTGG |
|||
MAF |
D16S3101 |
F: TTCCTGAATGTCATGTAGTTGG |
158-166 |
R: TGTCATCGGGGCTTGTAG |
|||
D16S3119 |
F: TAGGCATGACTGGGGGT |
293-305 |
|
R: TGAACTAACACAAGCAGCCA |
|||
CRYBA1 |
D17S1294 |
F: TGGCATGCAATTGTAGTCTC |
248-272 |
R: TTCTTTCCTTACTAAGTTGAGAACG |
|||
D17S1857 |
F: TGCACAGGCCAATTCCTTAC |
177-187 |
|
R: TGCCTAAACTGCTTTCAGGTGAG |
|||
FTL |
D19S902 |
F: CCATCCTAATGAGGGCAA |
199-217 |
R: GCACCAGTGACTGCCTGT |
|||
D19S585 |
F: AGCACCATAATGCCTGGATA |
103-127 |
|
R: CAGCATAGCAAGACCCTGTC |
|||
CHMP4B |
D20S195 |
F: GTACCTCCTCCAGGCTTC |
237-261 |
R: AGGGGTGTATGTGTGCAT |
|||
D20S847 |
F: AAGCCGGAAATCTGGACTT |
113-145 |
|
R: ATGTGGTTTGGGTTCCCT |
|||
CRYAA |
D21S1890 |
F: GGTCTGACCACAGATTTCC |
143-173 |
R: AAAAACACTCTGAACGATTAAGG |
|||
D21S1260 |
F: TCCAAGGGGTTCATCC |
200-214 |
|
R: CCCAAGGCACTGTTCC |
|||
CRYBB1 |
D22S1167 |
F: ACATGGCAAAACCCAGTCTC |
266-278 |
CRYBB2 |
R: GGGGCTTCAACAACATTCTTAAC |
||
CRYBA4 |
D22S419 |
F: GGCTCAGGGACTCTGGA |
257-273 |
R: GGCCAATCGGTAGGTCA |
|||
D22S351 |
F: GTCAGGGCAGGTAAGGTTGA |
145-149 |
|
R: CTCCTGCCCTCGAAAGTCAT |
In the Table, F indicates Forward primer and R indicates Reverse primer.