Table 2.
Pairwise comparison between mouse Pl10 (mPl10) and the non-annotated homologous regions in eutheria.
| Genomic Position of Non-annotated PL10 Homologs | Identity with m Pl10 (%) | Alignment Coverage with m Pl10 (%)* | Aligned Segment NumberΔ | Putative Peptide Length (aa)# | |
|---|---|---|---|---|---|
| Human Chr4 | (HSA4) | 80.08 | 100.00 | 1 | 84 |
| Human ChrX | (HSAX) | 78.52 | 98.38 | 2 (Ins: 8958 bp) | 241(DDX3Y) |
| Chimp Chr4 | (PTR4) | 74.83 | 81.93 | 1 | 84 |
| Chimp ChrX | (PTRX) | 78.37 | 98.34 | 2 (Ins: 1134 bp; Ns: 3010 bp) | 472(DDX3X) |
| Orangutan Chr4 | (PPY4) | 79.80 | 74.18 | 2 (Ns: 463 bp) | 132 |
| Orangutan ChrX | (PPYX) | 80.94 | 67.42 | 1 | 124(DDX3Y) |
| Mouse Chr1 | (MMU1) | 79.45 | 95.41 | 1 | 349(DDX3X) |
| Rat Chr19 | (RNO19) | 80.27 | 51.08 | 3 (Ns: 1509 bp; Ins: 316 bp; Gap: 962 bp) | 192(DDX3X) |
| Dog Chr22 | (CFA22) | 73.00 | 58.00 | 1 | N/A |
| Horse Chr17 | (ECA17) | 75.98 | 96.82 | 1 | N/A |
| Cow Chr15 | (BTA15) | 81.00 | 72.52 | 1 | N/A |
* The alignment coverage was calculated based on the pairwise alignment between the mouse Pl10 and identified homologous regions.
Δ Ns: the homologous region contains incomplete sequences. Ins: the homologous region is interrupted by non-homologous sequences. Gap: part of mPl10 was not alignable with the detected homologous sequences.
# The peptides were predicted via GENSCAN [18]. The protein name in parenthesis indicated the matched entries with lowest e-value in blastp analysis. N/A: not applied.