Table 3A. Allele frequencies of chromosome 8 dbSNPs.
Gene | dbSNPa | Base pair | Location | MAFb | HCFc,d |
---|---|---|---|---|---|
SDC2 | rs2452993 | 97 574 572 | Upstream | 0.42 | 0.59*** |
SDC2 | rs2437772 | 97 582 153 | Intron 1 | 0.31 | 0.27 |
SDC2 | rs2437780 | 97 588 852 | Intron 1 | 0.30 | 0.26 |
SDC2 | rs2575738 | 97 599 578 | Intron 1 | 0.29 | 0.20* |
SDC2 | rs7003874 | 97 607 128 | Intron 1 | 0.46 | 0.35* |
SDC2 | rs874643 | 97 611 319 | Intron 1 | 0.19 | 0.40*** |
SDC2 | rs2440681 | 97 613 757 | Intron 1 | 0.35 | 0.22*** |
SDC2 | rs2582831 | 97 620 954 | Intron 1 | 0.28 | 0.44*** |
SDC2 | rs2582839 | 97 627 443 | Intron 1 | 0.29 | 0.46*** |
SDC2 | rs1444573 | 97 633 837 | Intron 1 | 0.37 | 0.58*** |
SDC2 | rs1984456 | 97 636 282 | Intron 1 | 0.35 | 0.48*** |
SDC2 | rs2582846 | 97 642 858 | Intron 1 | 0.20 | 0.43*** |
SDC2 | rs12156240 | 97 646 383 | Intron 1 | 0.49 | 0.69*** |
SDC2 | rs2575702 | 97 654 007 | Intron 1 | 0.34 | 0.46** |
SDC2 | rs2651472 | 97 665 849 | Intron 1 | 0.49 | 0.58* |
SDC2 | rs2028086 | 97 673 354 | Intron 1 | 0.24 | 0.14** |
SDC2 | rs1836910 | 97 680 704 | Intron 2 | 0.26 | 0.17* |
SDC2 | rs1042381 | 97 683 837 | Exon 3 | 0.18 | 0.14 |
SDC2 | rs2651454 | 97 690 146 | Intron 4 | 0.23 | 0.38*** |
SDC2 | rs2651458 | 97 694 626 | Downstream | 0.23 | 0.38*** |
SDC2 | rs714046 | 97 700 749 | Downstream | 0.19 | 0.2 |
GDF6 | rs2247792 | 97 219 221 | Upstream | 0.41 | 0.21*** |
GDF6 | rs2440199 | 97 225 587 | Exon 1 | 0.41 | 0.63*** |
GDF6 | rs2255182 | 97 234 080 | Intron 1 | 0.49 | 0.28*** |
GDF6 | rs2514527 | 97 238 503 | Intron 1 | 0.38 | 0.64*** |
GDF6 | rs2514531 | 97 243 999 | Downstream | 0.45 | 0.26*** |
GDF6 | rs714552 | 97 252 618 | Downstream | 0.40 | 0.61*** |
Bold dbSNPs are also genotyped in genome scan.
Minor allele frequency of non-Hispanic white data set.
Corresponding frequency in Hispanic of non-Hispanic white minor allele.
P-value less than *0.05, **0.001 and ***0.0001.