Table 1.
Haplotypes (for HVRI, HVRII and the four coding segments typed in possible H samples) and haplogroup classification in El Jadida.
| Sample | HVRI | HVRII | Haplogroup | Other polymorphisms |
|---|---|---|---|---|
| J1 | 0 | 263 309.1 315.1 | H* | |
| J2 | 129 184 | 146 263 309.2 315.1 | H* | |
| J3 | 304 | 263 309.1 315.1 | H* | |
| J4 | 0 | 263 315.1 | H1 | 3010 |
| J5 | 0 | 263 309.1 315.1 | H1 | 3010 |
| J6 | 0 | 263 309.2 315.1 | H1 | 3010 |
| J7 | 0 | 263 309.1 315.1 | H1 | 3010 |
| J8 | 0 | 263 309.2 315.1 | H1 | 3010 |
| J9 | 209 | 114 146 263 309.1 315.1 | H1 | 3010 |
| J10 | 212 | 263 309.1 315.1 | H1 | 3010 |
| J11 | 218 | 263 309.2 315.1 | H1 | 3010 |
| J12 | 318A/C | 114 263 309.2 315.1 | H1 | 3010 |
| J13 | 355 | 263 315.1 | H1 | 3010 |
| J14 | 0 | 263 309.1 315.1 | H7 | 4793 |
| J15 | 67 | 263 309.1 315.1 | HV1 | |
| J16 | 93 298 311 | 72 263 315.1 | V | |
| J17 | 153 193 298 | 72 195 263 309.1 315.1 | V | |
| J18 | 153 298 | 72 195 263 315.1 | V | |
| J19 | 193 | 72 93 263 309.1 315.1 | V | |
| J20 | 298 | 72 195 263 309.1 315.1 | V | |
| J21 | 298 | 72 263 309.1 315.1 | V | |
| J22 | 298 | 72 263 309.1 315.1 | V | |
| J23 | 298 | 72 195 263 309.2 315.1 | V | |
| J24 | 126 291 362 | 58 64 152 263 315.1 | R0a | 7028 |
| J25 | 126 291 362 | 58 64 152 263 315.1 | R0a | 7028 |
| J26 | 126 362 | 58 64 263 315.1 | R0a | |
| J27 | 93 224 311 | 73 263 309.1 315.1 | K | |
| J28 | 224 287 311 | 73 146 263 309.1 315.1 | K | |
| J29 | 224 287 311 | 73 146 263 309.1 315.1 | K | |
| J30 | 224 287 311 | 73 146 263 309.1 315.1 | K | |
| J31 | 224 287 311 | 73 146 263 309.1 315.1 | K | |
| J32 | 224 287 311 | 73 146 263 309.1 315.1 | K | |
| J33 | 224 311 | 73 263 280G/C 315.1 | K | |
| J34 | 224 311 | 73 263 280C/G 315.1 | K | |
| J35 | 69 126 | 73 185 228 263 295 315.1 | J | |
| J36 | 69 126 | 73 185 225 228 263 295 315.1 | J | |
| J37 | 69 126 193 300 309 | 73 263 309.1 315.1 | J | |
| J38 | 69 126 193 265A/T | 73 146 150 152 263 295 315.1 | J2 | |
| J39 | 69 126 193 278 291 | 73 150 152 263 295 309.1 315.1 | J2 | |
| J40 | 69 126 193 195 278 | 73 150 152 196insT 263 295 309.1 315.1 | J2 | |
| J41 | 126 220 292 294 | 73 146 152 195 263 279 315.1 | T | |
| J42 | 126 163 186 189 193del 294 | 73 263 309.1 315.1 | T1 | |
| J43 | 173 183A/C 189 223 278 | 73 146 153 195 225 226 263 309.1 315.1 | X | |
| J44 | 145 176C/G 223 311 390 | 73 152 204 263 315.1 | N1b | |
| J45 | 0 | 73 195 263 315.1 | U | 7028 |
| J46 | 0 | 73 195 263 315.1 | U | 7028 |
| J47 | 311 | 263 309.1 315.1 | U | 7028 |
| J48 | 287 356 | 73 195 263 309.1 315.1 | U4 | |
| J49 | 189 270 | 73 146 195 263 315.1 | U5b | |
| J50 | 172 189 219 261 278 | 73 263 309.1 315.1 | U6a | |
| J51 | 172 219 278 300 | 73 242 263 309.1 315.1 | U6a | |
| J52 | 129 183A/C 189 223 235 249 311 | 73 152 195 263 315.3 | M1 | |
| J53 | 183A/C 189 249 265A/C 280 311 | 73 146 195 263 315.1 | M1 | |
| J54 | 183A/C 189 249 265A/C 280 311 | 73 146 195 263 315.1 | M1 | |
| J55 | 129 189 223 249 311 359 | 263 309.1 309.2 315.1 | M1a | |
| J56 | 129 189 223 249 311 359 | 73 195 198 263 315.1 | M1a | |
| J57 | 126 187 189 215A/T 223 264 270 278 293 311 | 73 152 182 185G/C 195 247 263 309.1 315.1 357 | L1b1 | |
| J58 | 126 187 189 223 264 270 278 293 311 | 73 152 182 185G/T 189 195 207 247 263 309.1 315.1 357 | L1b1 | |
| J59 | 126 187 189 223 264 270 278 293 311 | 73 152 182 185G/C 195 247 263 315.1 357 | L1b1 | |
| J60 | 126 187 189 223 264 270 278 293 311 355 | 73 152 182 185G/T 195 247 263 315.1 357 | L1b1 | |
| J61 | 126 187 189 223 264 270 278 293 311 355 | 73 152 182 185G/T 195 247 263 315.1 357 | L1b1 | |
| J62 | 17 148 163 187 189 223 278 293 294 311 360 | 73 89 93 151 182 186C/A 189A/C 247 263 315.1 316 | L1c4 | |
| J63 | 86 223 278 294 309 390 | 73 143 146 152 195 198 263 315.1 | L2a1 | |
| J64 | 167 192 223 278 294 309 390 | 73 143 146 152 195 263 309.1 315.1 | L2a1 | |
| J65 | 145 213 223 278 294 390 | 73 146 152 195 263 315.1 | L2a1 | |
| J66 | 189 192 223 278 294 309 357 390 | 73 143 146 152 195 263 315.1 | L2a1 | |
| J67 | 189 192 223 278 294 309 | 73 143 146 152 195 263 315.1 | L2a1 | |
| J68 | 51 172 223 266 278 362 | 73 263 315.1 | L2c1 | |
| J69 | 129 183A/C 189 278 300 354 357 390 | 73 146 150 195 263 309.2 315.1 | L2d1 | |
| J70 | 209 223 | 73 152 235 263 309.1 315.1 | L3f1a | |
| J71 | 124 223 278 362 | 73 263 309.1 315.1 | L3b1 | |
| J72 | 124 223 336 | 73 152 242 263 315.1 | L3d | |
| J73 | 124 223 256 | 73 152 189 195 263 315.1 | L3d1'2'3' | |
| J74 | 124 192 223 256 | 73 152 189 195 263 309.1 315.1 | L3d1'2'3' | |
| J75 | 223 320 399 | 73 152 195 198 263 315.1 | L3e2a | |
| J76 | 223 311 320 | 73 150 195 198 263 315.1 | L3e2a | |
| J77 | 172 183A/C 187 189 223 320 | 73 150 195 236 263 309.1 315.1 316 | L3e2b | |
| J78 | 172 209 223 292 311 | 73 189 200 263 315.1 | L3f1b | |
| J79 | 188 223 292 295 311 | 73 189 200 263 309.1 315.1 | L3f1 | |
| J80 | 209 223 292 311 390 | 73 189 200 263 315.1 | L3f1b | |
| J81 | 129 223 256C/A 278 311 362 | 73 151 152 189A/C 195 263 294 309.1 315.1 | L3h1b | |
Variant positions from the rCRS are shown between 16017 and 16399 in HVRI (minus 16000), 72 and 357 for HVRII and the four coding region fragments (3001-3360, 3661-4050, 4281-4820, and 6761-7050). Substitutions are transitions unless the base change or a deletion is explicitly indicated. Insertions of one and two cytosines are shown by appending '1' and '2', respectively.