Table 2.
Diversity measures in El Jadida and neighbour populations, within HVRI.
| Sample | n | Different sequences (%) |
Haplotype Diversity (SE) | Nucleotide Diversity (SE) | Mean no. pairwise differences (SE) | Tajima's D (p value) | Fu's Fs (p value) |
|---|---|---|---|---|---|---|---|
| El Jadida | 81 | 59 (73%) | 0.982 (0.008) | 0.017 (0.009) | 5.945 (2.866) | -1.777 (0.007) | -25.241 (0.000) |
| Algeria | 86 | 31 (36%) | 0.945 (0.010) | 0.013 (0.007) | 4.822 (2.377) | -1.090 (0.129) | -13.198 (0.002) |
| Morocco Berber | 60 | 38 (63%) | 0.963 (0.015) | 0.013 (0.007) | 4.594 (2.287) | -1.862 (0.012) | -25.683 (0.000) |
| Morocco non-Berber | 32 | 29 (91%) | 0.988 (0.014) | 0.017 (0.009) | 6.026 (2.948) | -1.735 (0.022) | -24.805 (0.000) |
| Souss | 50 | 34 (68%) | 0.961 (0.018) | 0.013 (0.007) | 4.604 (2.298) | -1.551 (0.034) | -25.618 (0.000) |
| Testour | 50 | 36 (72%) | 0.958 (0.021) | 0.016 (0.009) | 5.783 (2.814) | -1.867 (0.008) | -25.269 (0.000) |
| Slouguia | 28 | 20 (71) | 0.971 (0.018) | 0.015 (0.008) | 5.254 (2.618) | -1.472 (0.055) | -10.159 (0.000) |
| El Alia | 48 | 27 (56%) | 0.960 (0.016) | 0.015 (0.008) | 5.507 (2.695) | -1.385 (0.060) | -12.910 (0.000) |
| Qalaat El Andalous | 29 | 17 (59%) | 0.946 (0.024) | 0.012 (0.007) | 4.493 (2.278) | -0.946 (0.180) | -6.559 (0.003) |
| Tunis | 51 | 44 (86%) | 0.992 (0.006) | 0.018 (0.010) | 6.512 (3.131) | -1.717 (0.024) | -25.154 (0.000) |
| Zriba | 35 | 17 (49%) | 0.926 (0.028) | 0.015 (0.008) | 5.398 (2.665) | -1.156 (0.130) | -3.863 (0.076) |
| Kesra | 43 | 30 (70%) | 0.960 (0.020) | 0.018 (0.010) | 6.405 (3.094) | -1.611 (0.027) | -17.708 (0.000) |
| Skira | 20 | 14 (70%) | 0.937 (0.043) | 0.011 (0.007) | 4.137 (2.148) | -1.598 (0.045) | -6.234 (0.003) |
| Egypt | 68 | 59 (87%) | 0.993 (0.005) | 0.020 (0.010) | 7.075 (3.362) | -1.768 (0.016) | -25.013 (0.000) |
| Ethiopia | 89 | 69 (78%) | 0.990 (0.005) | 0.023 (0.012) | 8.145 (3.815) | -1.705 (0.018) | -24.759 (0.000) |
| Mauritania | 30 | 23 (77%) | 0.975 (0.017) | 0.017 (0.009) | 6.025 (2.953) | -0.738 (0.255) | -12.983 (0.000) |
| Nubia | 80 | 53 (66%) | 0.977 (0.008) | 0.023 (0.012) | 8.203 (3.844) | -1.420 (0.056) | -24.779 (0.000) |
| Senegal | 50 | 42 (84%) | 0.989 (0.008) | 0.017 (0.009) | 6.283 (3.032) | -1.127 (0.141) | -25.208 (0.000) |
| Serer | 23 | 21 (91%) | 0.992 (0.015) | 0.023 (0.012) | 8.340 (4.009) | -1.036 (0.152) | -11.679 (0.000) |
| Libya | 129 | 20 (16%) | 0.677 (0.046) | 0.011 (0.006) | 3.983 (2.005) | -1.254 (0.088) | -2.726 (0.223) |
SE stands for standard error. Values in bold are statistically significant at the 5% level.