Table 2.
Tick specimens included in this study: source, nucleotide diversity, intrahost variation and infection status.
| Percentage with Mutations |
|||||||
|---|---|---|---|---|---|---|---|
| Specimen | Nucleotides | Clones | Haplotypes | Π | pN | dN/dS | RNA Copies |
| DTV FB1015 #5 | 0.003a | 5 | 2 | ND | ND | ND | 7.17e5 |
| DTV MB1015 #38 | 0.005 | 10 | 3 | 0.00011 | 1.000 | 1.000 | 1.05e6 |
| DTV FB1017 #177 | 0.003 | 9.5 | 2 | 0.0001 | 1.000 | 1.000 | 1.33e6 |
| DTV MA1017 #254 | 0.003 | 4.7 | 2 | 0.00005 | 1.000 | 1.000 | 1.93e6 |
| DTV FA512 #40 | 0.006 | 12 | 3 | 0.00016 | 1.000 | 1.000 | ND |
| DTV FB513 #1 | 0.003 | 5 | 2 | 0.00005 | 1.000 | 1.000 | 1.57e7 |
| DTV MB512 #27 | 0.003 | 6 | 2 | 0.00006 | 1.000 | 1.000 | 2.10e6 |
| DTV MA512 #40 | 0.008a | 20 | 4 | 0.00011 | 1.000 | 1.000 | ND |
| DTV MB512 #73 | 0.003 | 5.3 | 2 | 0.00006 | 1.000 | 1.000 | 9.49e5 |
| DTV MC514 #32 | 0.006 | 10.5 | 3 | 0.00011 | 0.500 | 0.302 | 1.20e6 |
| Mean | 0.0043 | 8.8 | 2.1 | 0.00009 | 0.944 | 0.922 | 3.12e6 |
a
specimens included one insertion or deletion mutant which were used in determining the nucleotide and clone diversities and were included in the total haplotype count, but were not used to calculate Π, pN and dN/dS ratios.