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The atom pairs in the D1 and D2 lobes of the GluK1–LBC ligand-binding pocket selected for distance measurements from MD trajectories. The D1–D2 atom pairs indicated by dotted lines include: Glu441Cα-Ser721Cα, Thr518Cα-Ser689Cα, Pro516O-Glu738Cα, and Gly490O-Asp687N. The bound (S)-glutamate skeleton is shown as a black ball-and-stick representation. The D2 is shown with darker color than the D1.
