TABLE 1.
Strain, plasmid, or primer | Relevant information | Source or reference |
---|---|---|
Bacterial strains | ||
E. coli strains | ||
DH5α | F− φ80lacZ M15 endA recA hsdR(rk− mk−) supE thi gyrA relA Δ(lacZYA-argF)U169 | Laboratory stock |
BL21(DE3) | F−ompT hsdSB(rB− mB−) gal dcm | Novagen |
JM110 | dam dcm mutant | Laboratory stock |
BW25113 | K-12 derivative; ΔaraBAD ΔrhaBAD | 12 |
S. coelicolor | ||
A3(2)M145 | SCP1− SCB2− Pgl+ | KCTCa |
BG711 | absC deletion mutant | This paper |
BG712 | A3(2) M145 carrying pYH713 | This paper |
BG713 | absC deletion mutant carrying pYH713 | |
BG714 | absC deletion mutant carrying pYH714 | |
Plasmids | ||
pET24ma | p15A replication origin, T7 lac promoter, C-terminal His-tag coding, Kanr | 40 |
pIBR25 | pWHM3 carrying ermE* promoter (EcoRI/KpnI) from Saccharopolyspora erythraea | 37 |
pYH712 | pET24ma carrying PCR product of absC from S. coelicolor | |
pYH713 | pIBR25 carrying PCR product of absC (SCO5405) from S. coelicolor | |
pYH714 | pWHM3 carrying PCR product of SCO5405 and SCO5406 together with 200 bp upstream of SCO5406 as the promoter | |
pIJ773 | aac(3)IV(Aprar) + oriT | 12 |
Primers | ||
5405SCf | CGTGGATCCATGGAGACCGAGACGGCCAC | |
5405SCb | ACGAAGCTTTCAACCGTTGCGGCGCAGCG | |
5406_200bp | ATATGGATCCGTCTTCGAGGTGCCCATCACC/ATATAAGCTTGATCAGGGACTCAGGGTCGTCb | |
5405Ecolif | CGTGGATCCATGGAGACCGAGACGGCCAC | |
5405Ecolib | ACGAAGCTTTCAGTGGTGGTGGTGGTGGTGACCGTTGCGGCGCAGCG | |
Del5405f | TAGTTCGCCTTTCAACCTTTTAGGTAGACTTCATTCATGATTCCGGGGATCCGTCGACC | |
Del5405b | CCGGGCCGGAACGGCCCGGGACATGTGATCAGGGACTCATGTAGGCTGGAGCTGCTTC | |
5405confirm | CGGTAATCTGCGGAGTGTGAC/GCACGCTCACGGTGCACGACGb | |
Del-scbRf | ATCCTTCCCGGGGGAGACATGAACAAGGAGGCAGGCATGATTCCGGGGATCCGTCGACC | |
Del-scbRb | ACGGCGGGTCGGTATCCGGTGCGGGCGCTTCGGCGGTCATGTAGGCTGGAGCTGCTTC | |
EMSA-citA | ACGGTGTCGGCCGGGAGGCGG/GTCTTCCCTCACCGACGTAGTb | 300 bp (−300∼−1) |
EMSA-sacA | CCCCTTCCGTGTCGCGCCGGG/GACAGTCTCCTTCATTTATGTb | 300 bp (−300∼−1) |
EMSA-aceE1 | CCCTGGAGAAGGGCTGCGGAC/GTCGCCGCCTTCCTCAGTCGAb | 300 bp (−300∼−1) |
EMSA-aceE2 | GGTGACGATCCCGGCTGTGTC/GCTGTTCCTTCGCTGTCAGAGb | 300 bp (−300∼−1) |
KCTC, Korean Collection for Type Culture.
Forward/reverse.