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. 2010 Apr 9;76(11):3645–3656. doi: 10.1128/AEM.02617-09

TABLE 1.

Strains, plasmids, and primers

Strain, plasmid, or primer Relevant information Source or reference
Bacterial strains
    E. coli strains
        DH5α F φ80lacZ M15 endA recA hsdR(rk mk) supE thi gyrA relA Δ(lacZYA-argF)U169 Laboratory stock
        BL21(DE3) FompT hsdSB(rB mB) gal dcm Novagen
        JM110 dam dcm mutant Laboratory stock
        BW25113 K-12 derivative; ΔaraBAD ΔrhaBAD 12
    S. coelicolor
        A3(2)M145 SCP1 SCB2 Pgl+ KCTCa
        BG711 absC deletion mutant This paper
        BG712 A3(2) M145 carrying pYH713 This paper
        BG713 absC deletion mutant carrying pYH713
        BG714 absC deletion mutant carrying pYH714
Plasmids
    pET24ma p15A replication origin, T7 lac promoter, C-terminal His-tag coding, Kanr 40
    pIBR25 pWHM3 carrying ermE* promoter (EcoRI/KpnI) from Saccharopolyspora erythraea 37
    pYH712 pET24ma carrying PCR product of absC from S. coelicolor
    pYH713 pIBR25 carrying PCR product of absC (SCO5405) from S. coelicolor
    pYH714 pWHM3 carrying PCR product of SCO5405 and SCO5406 together with 200 bp upstream of SCO5406 as the promoter
    pIJ773 aac(3)IV(Aprar) + oriT 12
Primers
    5405SCf CGTGGATCCATGGAGACCGAGACGGCCAC
    5405SCb ACGAAGCTTTCAACCGTTGCGGCGCAGCG
    5406_200bp ATATGGATCCGTCTTCGAGGTGCCCATCACC/ATATAAGCTTGATCAGGGACTCAGGGTCGTCb
    5405Ecolif CGTGGATCCATGGAGACCGAGACGGCCAC
    5405Ecolib ACGAAGCTTTCAGTGGTGGTGGTGGTGGTGACCGTTGCGGCGCAGCG
    Del5405f TAGTTCGCCTTTCAACCTTTTAGGTAGACTTCATTCATGATTCCGGGGATCCGTCGACC
    Del5405b CCGGGCCGGAACGGCCCGGGACATGTGATCAGGGACTCATGTAGGCTGGAGCTGCTTC
    5405confirm CGGTAATCTGCGGAGTGTGAC/GCACGCTCACGGTGCACGACGb
    Del-scbRf ATCCTTCCCGGGGGAGACATGAACAAGGAGGCAGGCATGATTCCGGGGATCCGTCGACC
    Del-scbRb ACGGCGGGTCGGTATCCGGTGCGGGCGCTTCGGCGGTCATGTAGGCTGGAGCTGCTTC
    EMSA-citA ACGGTGTCGGCCGGGAGGCGG/GTCTTCCCTCACCGACGTAGTb 300 bp (−300∼−1)
    EMSA-sacA CCCCTTCCGTGTCGCGCCGGG/GACAGTCTCCTTCATTTATGTb 300 bp (−300∼−1)
    EMSA-aceE1 CCCTGGAGAAGGGCTGCGGAC/GTCGCCGCCTTCCTCAGTCGAb 300 bp (−300∼−1)
    EMSA-aceE2 GGTGACGATCCCGGCTGTGTC/GCTGTTCCTTCGCTGTCAGAGb 300 bp (−300∼−1)
a

KCTC, Korean Collection for Type Culture.

b

Forward/reverse.