TABLE 1.
Fifty genes most upregulated in consolidate compared to broth-cultured cells
| Gene | Annotation | Swarma | Fold change |
|---|---|---|---|
| PMI1629 | fliE flagellar hook-basal body complex protein FliE | Yes | 10.20 |
| PMI1654 | flgB flagellar basal body rod protein FlgB | Yes | 10.17 |
| PMI1618 | fliA RNA polymerase sigma factor for flagellar operon | Yes | 9.86 |
| PMI1961 | ccm putative membrane protein (Ccm1 protein) | Yes | 9.49 |
| PMI1649 | flgG flagellar basal body rod protein FlgG (distal rod protein) | Yes | 9.24 |
| PMI1653 | flgC flagellar basal body rod protein FlgC | Yes | 8.96 |
| PMI2898 | Putative amino acid ABC transporter, substrate-binding protein | Yes | 8.86 |
| PMI1650 | flgF flagellar basal body rod protein | Yes | 8.85 |
| PMI1631 | fliG flagellar motor switch protein FliG | Yes | 8.50 |
| PMI1637 | fliM flagellar motor switch protein FliM | Yes | 8.48 |
| PMI1636 | fliL flagellar protein FliL | Yes | 8.37 |
| PMI1621 | flaD flagellar hook-associated protein 2 | Yes | 8.19 |
| PMI1617 | fliZ putative alternative sigma factor regulatory protein | Yes | 8.19 |
| PMI1359 | Putative attachment invasion locus protein | Yes | 8.13 |
| PMI0182 | Putative transcriptional regulator (MrpJ homolog) | Yes | 7.90 |
| PMI1630 | fliF flagellar M-ring protein | No | 7.82 |
| PMI1651 | flgE flagellar hook protein FlgE | Yes | 7.76 |
| PMI1318 | nlpA lipoprotein 28 | No | 7.71 |
| PMI1638 | fliN flagellar motor switch protein FliN | Yes | 7.39 |
| PMI1442 | Hypothetical protein | Yes | 7.28 |
| PMI1647 | flgI flagellar P-ring protein precursor | Yes | 7.21 |
| PMI0876 | umoD upregulator of flagellar master operon | Yes | 7.18 |
| PMI1660 | flhB flagellar biosynthetic protein FlhB | No | 7.18 |
| PMI1671 | flhC flagellum biosynthesis transcription activator | No | 6.85 |
| PMI1624 | Conserved hypothetical protein | No | 6.82 |
| PMI3460 | Putative lipoprotein | Yes | 6.63 |
| PMI0808 | ddg cold-induced palmitoleoyl transferase | No | 6.62 |
| PMI2496 | rsmC rRNA small subunit methyltransferase C | Yes | 6.49 |
| PMI1908 | Putative colicin | No | 6.38 |
| PMI3036 | sodA superoxide dismutase (Mn) | Yes | 6.31 |
| PMI1248 | Putative cystathionine gamma-synthase | Yes | 6.09 |
| PMI1669 | motB chemotaxis motility protein B | Yes | 5.96 |
| PMI1657 | flgN flagellar synthesis protein FlgN | Yes | 5.92 |
| PMI1666 | cheD methyl-accepting chemotaxis protein | No | 5.76 |
| PMI0994 | Putative lipoprotein | Yes | 5.72 |
| PMI1645 | flgK flagellar hook associated protein 1 | Yes | 5.72 |
| PMI1661 | cheZ chemotaxis phosphatase | Yes | 5.65 |
| PMI1644 | flgL flagellar hook-associated protein 3 | Yes | 5.51 |
| PMI0272 | Probable transport protein | Yes | 5.41 |
| PMI1622 | fliS flagellar protein FliS | Yes | 5.40 |
| PMI1635 | fliK flagellar hook length control protein | Yes | 5.39 |
| PMI0044 | Putative outer membrane protein | No | 5.37 |
| PMI0842 | TonB-dependent receptor | Yes | 5.33 |
| PMI1670 | motA chemotaxis motility protein A | Yes | 5.29 |
| PMI1633 | fliI flagellum-specific ATP synthase | No | 5.18 |
| PMI0029 | exbB biopolymer transport protein | Yes | 5.03 |
| PMI1662 | cheY chemotaxis response regulator | Yes | 5.01 |
| PMI3384 | fklB FkbP-type peptidyl-prolyl cis-trans isomerase | No | 4.99 |
| PMI2808 | Methyl-accepting chemotaxis protein | Yes | 4.92 |
| PMI1835 | cysP sulfate/thiosulfate ABC transporter, thiosulfate-binding protein | Yes | 4.91 |
a
Genes that are also listed on Table 2.