TABLE 3.
Fifty genes most upregulated in consolidate compared to swarm
| Gene | Annotation | Fold change |
|---|---|---|
| PMI0785 | ompA outer membrane protein A | 9.09 |
| PMI1908 | Putative colicin | 8.30 |
| PMI1475 | oppA periplasmic oligopeptide-binding protein precursor | 8.10 |
| PMI1592 | fbaB fructose-bisphosphate aldolase class I | 7.86 |
| PMI0250 | Putative lipoprotein | 7.73 |
| PMI2019 | gcvP glycine dehydrogenase | 7.58 |
| PMI3037 | acs acetyl-coenzyme A synthetase | 7.52 |
| PMI2236 | rpoS RNA polymerase sigma factor RpoS | 7.48 |
| PMI2662 | chb secreted chitin-binding protein | 6.96 |
| PMI0437 | gltI glutamate/aspartate ABC transporter, substrate-binding protein | 6.91 |
| PMI3579 | Conserved hypothetical protein | 6.89 |
| PMI1056 | Putative TRAP-type transport system substrate-binding protein | 6.86 |
| PMI2114 | Putative sodium:alanine symporter | 6.82 |
| PMI1474 | oppB oligopeptide transport system permease protein | 6.70 |
| PMI1421 | ppsA phosphoenolpyruvate synthase | 6.69 |
| PMI1722 | Phage protein | 6.68 |
| PMI1615 | putP proline permease | 6.49 |
| PMI2246 | cysD sulfate adenylyltransferase subunit 2 | 6.37 |
| PMI2052 | coaE dephospho-CoA kinase | 6.36 |
| PMI2255 | Conserved hypothetical protein | 6.34 |
| PMI2254 | mdeA methionine gamma-lyase | 6.33 |
| PMI3177 | kbl 2-amino-3-ketobutyrate coenzyme A ligase | 6.28 |
| PMI1075 | Hypothetical protein | 6.27 |
| PMI0968 | Isocitrate dehydrogenase (NADP) (partial) | 6.20 |
| PMI3559 | accA3 putative bifunctional acetyl-/propionyl-coenzyme A carboxylase alpha chain | 6.17 |
| PMI3556 | Putative transmembrane transport protein | 6.16 |
| PMI0564 | gltA citrate synthase GltA | 6.11 |
| PMI0971 | Putative lipase | 6.03 |
| PMI1451 | uspG2 universal stress protein G | 6.02 |
| PMI3178 | tdh threonine 3-dehydrogenase | 6.01 |
| PMI2256 | Putative oxidoreductase | 5.99 |
| PMI1471 | oppF oligopeptide transport ATP-binding protein | 5.95 |
| PMI1473 | oppC oligopeptide transport system permease protein | 5.90 |
| PMI1171 | Conserved hypothetical protein | 5.77 |
| PMI1472 | oppD oligopeptide transport ATP-binding protein | 5.76 |
| PMI1616 | putA proline dehydrogenase/delta-1-pyrroline-5-carboxylate | 5.76 |
| PMI0360 | Putative general stress response protein | 5.69 |
| PMI1730 | rcsB two-component system response regulator, capsular synthesis | 5.62 |
| PMI2268 | Short-chain dehydrogenase | 5.60 |
| PMI0047 | Putative secreted 5'-nucleotidase | 5.54 |
| PMI2036 | Putative exported protein | 5.49 |
| PMI1737 | Putative lipoprotein | 5.49 |
| PMI3401 | sfsB sugar fermentation stimulation protein | 5.43 |
| PMI2890 | greB transcription elongation factor | 5.42 |
| PMI1509 | dadAd-amino acid dehydrogenase small subunit | 5.38 |
| PMI3701 | Putative sodium:dicarboxylate symporter | 5.37 |
| PMI0952 | Putative isocitrate dehydrogenase (NADP) (partial) | 5.34 |
| PMI3204 | sbp exported sulfate-binding protein | 5.33 |
| PMI3115 | umoA putative upregulator of flagellar operon | 5.32 |
| PMI3449 | Conserved hypothetical protein | 5.30 |