TABLE 5.

Genes analyzed by qRT-PCR^a

Gene	Name	Annotation	Log2 fold change
			Array	qRT-PCR
PMI0437	gltI	Glutamate/aspartate ABC transport	2.79	2.46 ± 0.72
PMI0785	ompA	Outer membrane protein A	3.18	6.64 ± 0.59
PMI0875	ndh	NADH dehydrogenase	−2.22	−2.11 ± 0.77
PMI0913	cspA	Cold shock protein	−1.38	−2.00 ± 0.68
PMI1475	oppA	Oligopeptide ABC transporter	3.02	2.80 ± 1.49
PMI1722		Phage protein	2.74	−1.77 ± 1.64
PMI1730	rcsB	Capsular synthesis regulator	2.49	0.16 ± 0.34
PMI1908		Putative colicin	3.05	1.27 ± 1.11
PMI2250	cysJ	Sulfite reductase (NADPH) flavoprotein	2.09	3.08 ± 0.98
PMI3037	acs	Acetyl coenzyme A synthetase	2.91	1.11 ± 0.40

^aPositive values are upregulated in consolidate compared to swarm; negative values are upregulated in swarm compared to consolidate.