. 2010 Mar 24;84(11):5508–5519. doi: 10.1128/JVI.02483-09

TABLE 1.

Sequences of Nef73 and Nef84 epitopes in HIV-1 from the 5 subjects whose Nef73- and Nef84-specific CD8 T cells were analyzed for PD-1 expression

Patient ID or sequence description	Sequence^a
Patient ID or sequence description	Nef73	Nef84
Wild type	`QVPLRPMTYK`	`AV(L)DLSHFLK`
KI-015^b	`- - - - - - - - - -`	`- - - - - - - - -`
KI-036^c	`- - - - - - - - - -`	`- L - - - - - - -`
KI-387^b	`- - - - - - - - - -`	`- L - - - - - - -`
KI-390^b	`- - - - - - - - - -`	`- L - - - - - - R`
KI-464^b	`- - - - - - - - - -`	`- L - - - - - - K/R^d`

Sequences were analyzed by the direct sequencing method. “-” indicates agreement with wild-type sequence.

The same sample was analyzed for sequencing and PD-1 expression.

This patient was analyzed for the sequence of HIV-1 on 6 October 2005 and for PD-1 expression on the T cells on 14 July 1999.

The mixture of sequences carrying K or R at position 9 was detected.