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. 2010 Jun 2;98(11):2682–2691. doi: 10.1016/j.bpj.2010.02.034

Figure 2.

Figure 2

Examples of the four different starting conformations for the MD simulations. The heme is displayed in space-fill and is oriented in the same way in all figures. The ligand is displayed in ball-and-stick, with carbon atoms and the residues of the protein in sticks. (A) N_1 pose of compound TH6. (B) N_2 pose of compound TH1. (C) Pose S_1 of compound TH6. (D) Pose S_2 of compound TH7.