PCD during tracheo-oesophageal separation at E11.5 and E12.5: effect of Adriamycin and loss of Nkx2.1 or Apaf1 function. (A–W) Immunohistochemistry for activated caspase 3 on transverse sections through the foregut of E11.5 saline-treated (A–G; n = 6), Adriamycin-treated (H–N; n = 6) and Nkx2.1−/− (O–U; n = 3) embryos, and of E12.5 Apaf1+/+ and Apaf1−/− embryos (V,W; n = 3). Sections are from levels indicated on the schematic representation. (A1–N1) Templates used to illustrate spatial PCD patterns as described in Fig. 5. Horizontal lines define foregut zones for calculation of PCD index (see Fig. 7). Arrows in (E, E1) indicate the concentration of apoptotic cells in epithelial ridges immediately cranial to the point of foregut separation, a finding that is not seen in either Adriamycin-treated (L, L1) or Nkx2.1−/− (R–T) embryos. Arrowheads in (M1,N) show apoptotic cells in the dorsal mesenchyme associated with a cellular condensation. Arrowheads in (O–U) highlight excessive apoptosis in Nkx2.1−/− embryo. Circles in (V,W) highlight the separated trachea and oesophagus in Apaf1+/+ and Apaf1−/− embryos. Abbreviations as in Figs. 3, 4 and5. Scale bar (in A): 50 μm for all parts.