Table 2. Summary scaling statistics for three data sets, comparing the conventional approach of background rejection with the new approach of ice-ring subtraction.
The first two data sets were collected from C222 crystals of human acidic fibroblast growth factor mutants (Lee et al., 2008 ▶). ‘FGF-d’ was used for the structure determination of mutant L26N/D28A (PDB code 3ba7). ‘FGF-e’ was an ice-affected data set for mutant K112N/N114A that was replaced prior to structure determination (PDB code 3bag). ‘Sxa63’ is a data set from a P222 crystal of the Pyrococcus furiosus box C/D ribonucleoprotein particle that was also replaced prior to structure determination (Li et al., submitted work). Resolution shells affected by ice rings where the new procedure improves the completeness are shown in bold.
| FGF-d | FGF-e | Sxa63 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Background rejection | Ice-ring subtraction | Background rejection | Ice-ring subtraction | Background rejection | Ice-ring subtraction | |||||||||
| Resolution (Å) | Rmerge | Completeness (%) | Rmerge | Completeness (%) | Resolution (Å) | Rmerge | Completeness (%) | Rmerge | Completeness (%) | Resolution (Å) | Rmerge | Completeness (%) | Rmerge | Completeness (%) |
| ∞–4.00 | 0.049 | 94 | 0.050 | 95 | ∞–5.12 | 0.048 | 100 | 0.047 | 100 | ∞–6.79 | 0.070 | 100 | 0.076 | 100 |
| 4.00–3.18 | 0.075 | 70 | 0.071 | 99 | 5.12–4.08 | 0.062 | 100 | 0.062 | 100 | 6.79–5.42 | 0.088 | 100 | 0.088 | 100 |
| 3.18–2.78 | 0.083 | 96 | 0.083 | 97 | 4.08–3.57 | 0.117 | 37 | 0.147 | 98 | 5.42–4.75 | 0.097 | 100 | 0.099 | 100 |
| 2.78–2.52 | 0.091 | 87 | 0.091 | 87 | 3.57–3.24 | 0.130 | 65 | 0.125 | 100 | 4.75–4.32 | 0.102 | 100 | 0.102 | 100 |
| 2.52–2.34 | 0.096 | 76 | 0.097 | 76 | 3.24–3.01 | 0.143 | 99 | 0.120 | 98 | 4.32–4.01 | 0.111 | 100 | 0.116 | 100 |
| 2.34–2.20 | 0.128 | 51 | 0.142 | 76 | 3.01–2.83 | 0.171 | 95 | 0.135 | 95 | 4.01–3.78 | 0.170 | 72 | 0.165 | 100 |
| 2.20–2.09 | 0.120 | 74 | 0.113 | 76 | 2.83–2.69 | 0.201 | 92 | 0.153 | 92 | 3.78–3.59 | 0.404 | 47 | 0.346 | 100 |
| 2.09–2.00 | 0.159 | 77 | 0.159 | 77 | 2.69–2.57 | 0.277 | 92 | 0.214 | 91 | 3.59–3.43 | 0.233 | 100 | 0.229 | 100 |
| 2.00–1.93 | 0.190 | 77 | 0.174 | 78 | 2.57–2.48 | 0.274 | 91 | 0.205 | 90 | 3.43–3.30 | 0.243 | 100 | 0.258 | 100 |
| 1.93–1.86 | 0.204 | 69 | 0.226 | 78 | 2.48–2.39 | 0.325 | 89 | 0.233 | 89 | 3.30–3.19 | 0.273 | 100 | 0.327 | 100 |
| 1.86–1.80 | 0.244 | 77 | 0.236 | 77 | 2.39–2.32 | 0.418 | 89 | 0.244 | 88 | 3.19–3.09 | 0.339 | 100 | 0.398 | 100 |
| 1.80–1.75 | 0.280 | 77 | 0.283 | 77 | 2.32–2.25 | 0.595 | 33 | 0.645 | 87 | 3.09–3.00 | 0.387 | 100 | 0.439 | 99 |
| ∞–1.75 | 0.081 | 77 | 0.081 | 83 | ∞–2.25 | 0.124 | 82 | 0.122 | 94 | ∞–3.00 | 0.119 | 93 | 0.125 | 100 |