Table 2. Summary of C. perfringens genome sequences used in this study.
| Strain | Sequence Type | Total reads | Avg read length (nt) | N50 (bp) | Size (Mb) | Contigs | Proteins | Accn No. | Reference |
| CP4 | Illumina Solexa GA | 24,264,1361 | 35 | 83,876 | 3.6 | 99 | 3,489 | - | This study |
| JGS4143 | Roche 454 | 772,463 | 114 | 17,408 | 3.3 | 466 | 3,420 | - | This study |
| JGS4140 | Roche 454 | 243,977 | 390 | 170,860 | 3.7 | 111 | 3,368 | - | This study |
| JGS1521 | Roche 454 | 160,442 | 265 | 2,928 | 3.1 | 1,469 | 3,618 | - | This study |
| JGS5252 | Roche 454 | 288,622 | 283 | 57,941 | 3.2 | 135 | 3,061 | - | This study |
| JGS5621 | Roche 454 | 229,633 | 311 | 144,918 | 3.6 | 124 | 3,622 | - | This study |
| JGS1651 | Roche 454 | 270,702 | 386 | 163,406 | 3.8 | 124 | 3,497 | - | This study |
| JGS1473 | Roche 454 | 228,810 | 278 | 49,191 | 3.4 | 148 | 3,236 | - | This study |
| ATCC 13124 | Finished | -2 | - | - | 3.3 | - | 2,876 | CP000246 | [80] |
| SM101 | Finished | - | - | - | 2.9 | - | 2,558 | CP000312 | [80] |
| Str13 | Finished | - | - | - | 3 | - | 2,660 | BA000016 | [10] |
| NCTC 8239 | WGS3 | - | - | 134,604 | 3.3 | 55 | 2,933 | ABDY00000000 | |
| F4969 | WGS | - | - | 96,499 | 3.5 | 74 | 3,197 | ABDX00000000 | |
| ATCC 3626 | WGS | - | - | 88,742 | 3.9 | 98 | 3,623 | ABDV00000000 | |
| JGS1495 | WGS | - | - | 117,588 | 3.7 | 84 | 3,354 | ABDU00000000 | |
| JGS1721 | WGS | - | - | 80,514 | 4.1 | 221 | 3,345 | ABOO00000000 | |
| JGS1987 | WGS | - | - | 88,895 | 4.1 | 101 | 3,586 | ABDW00000000 |
1
total reads in single-end (2 lanes) and paired end (1 lane) runs.
2
not applicable.
3
WGS, Whole genome shotgun.