Table 4. Summary of predicted genes in NE pathogenicity locus 2.
| Locus_tag1 | Length (aa) | Predicted Product | Hit Description | E-value | % Identity | Subcellular localization | Conserved domains |
| CP4_0458 | 216 | sigma factor SgiI | putative DNA-directed RNA polymerase sigma factor (Clostridium perfringens D str. JGS1721) | 1E-113 | 97.7% (215/219 aa) | Unknown (N) | RNA polymerase sigma factor, region 2;RNA polymerase sigma-70 region 2 |
| CP4_0459 | 348 | conserved hypothetical protein | hypothetical protein CJD_0460 (Clostridium perfringens D str. JGS1721) | 1E-160 | 94.4% (337/348 aa) | Cellwall (N) | |
| CP4_0460 | 232 | putative VTC domain superfamily | conserved hypothetical protein (Clostridium perfringens D str. JGS1721) | 1E-129 | 99.6% (232/232 aa) | Unknown (N) | VTC domain |
| CP4_0461 | 226 | putative tubulin/FtsZ, GTPase | conserved hypothetical protein (Clostridium perfringens D str. JGS1721) | 1E-122 | 100% (226/226 aa) | Cytoplasmic Membrane (N) | |
| CP4_0462 | 183 | resolvase | resolvase domain-containing protein (Methanococcus vannielii SB) | 3E-57 | 57.1% (182/199 aa) | Unknown (N) | Resolvase, N-terminal;Recombinase, conserved site;Resolvase, helix-turn-helix region |
| CP4_0463 | 230 | putative VTC domain superfamily | conserved hypothetical protein (Clostridium perfringens D str. JGS1721) | 1E-130 | 99.6% (230/230 aa) | Unknown (N) | VTC domain |
| CP4_0464 | 222 | tubulin/FtsZ, GTPase | tubulin/FtsZ, GTPase (Clostridium perfringens D str. JGS1721) | 1E-121 | 99.5% (222/222 aa) | Cytoplasmic Membrane (N) | |
| CP4_0465 | 497 | CotH protein | CotH protein (Clostridium perfringens D str. JGS1721) | 0 | 99.8% (497/497 aa) | Unknown (N) | Spore coat protein CotH |
| CP4_0466 | 685 | conserved hypothetical protein | conserved hypothetical protein (Clostridium perfringens D str. JGS1721) | 0 | 98.5% (685/685 aa) | Unknown (N) | |
| CP4_0467 | 377 | putative heat repeat | heat repeat domain protein (Clostridium perfringens D str. JGS1721) | 0 | 99.5% (377/377 aa) | Unknown (N) | Armadillo-type fold;Carbamoyl phosphate synthetase, large subunit, ATP-binding;HEAT |
| CP4_0468 | 466 | Putative glycosyl transferase | chitin synthase (Clostridium perfringens D str. JGS1721) | 0 | 99.1% (466/466 aa) | Cytoplasmic Membrane (N) | Glycosyl transferase, family 2 |
See table 3 for descriptions.