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. 2010 Feb 17;38(10):e115. doi: 10.1093/nar/gkq042

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© The Author(s) 2010. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Scr and abd-A probes with and without 20-mer repeats. The lines at the top represent mature mRNA sequences for the Scr (A) and abd-A (B) genes, with the positions of probe regions denoted beneath. The shaded boxes represent the open reading frames of the respective mRNAs. Below the non-unique probes is shown the graphical output from the RepeatMap program, set to detect repeated sequences of 20 nt. The Y-axis log₁₀ scale shows the number of times a k-mer repeat (k = 20) is found elsewhere in the D. melanogaster genome. The X-axis plot shows the nucleotide position of the repeat within the probe sequence.