Table 1.
sRNAseq and Degradome Data Sets
| Name | Species/Tissue | Type | Sequencing Instrument | Number of Reads | Unique Reads | Reference(s) | Accession(s) (NCBI GEO) |
| AL-L1-sRNA | A. lyrata/rosette leaves | sRNAseq | Illumina/SBS | 583,895a | 382,520a | This study | GSM451894 |
| AL-F1-sRNA | A. lyrata/inflorescences | sRNAseq | SOLiD | 26,192,231a | 61,287,122b | This study | GSM512644 |
| AL-F2-sRNA | A. lyrata/inflorescences | sRNAseq | SOLiD | 21,620,398a | 52,184,197b | This study | GSM512645 |
| AT-deg1 | A. thaliana/inflorescences | Degradome | SOLiD | 9,031,213c | 671,981d | This study | GSM512878 |
| AT-deg2 | A. thaliana/inflorescences | Degradome | SOLiD | 9,612,258c | 878,714d | This study | GSM512879 |
| AL-deg1 | A. lyrata/inflorescences | Degradome | SOLiD | 7,087,227c | 739,992d | This study | GSM512880 |
| AL-deg2 | A. lyrata/inflorescences | Degradome | SOLiD | 15,665,420c | 743,889d | This study | GSM512881 |
| AT-F1-sRNA | A. thaliana/inflorescences | sRNAseq | Roche/454 | 205,649e | 100,658e | Rajagopalan et al. (2006) | GSM118372 |
| AT-F2-sRNA | A. thaliana/inflorescences | sRNAseq | Roche/454 | 78,596e | 57,966e | Kasschau et al. (2007) | GSM154336 |
| AT-F3-sRNA | A. thaliana/inflorescences | sRNAseq | Illumina/SBS | 7,686,781e | 2,841,896e | Lister et al. (2008) | GSM227608 |
| AT-F4-sRNA | A. thaliana/inflorescences | sRNAseq | Illumina/SBS | 7,576,080e | 1,482,150e | Montgomery et al. (2008) | GSM342999, GSM343000, GSM343001 |
| AT-Sq1-sRNA | A. thaliana/siliques | sRNAseq | Roche/454 | 305,764e | 141,539e | Rajagopalan et al. (2006) | GSM118375 |
| AT-Se1-sRNA | A. thaliana/seedlings | sRNAseq | Roche/454 | 188,954e | 77,937e | Rajagopalan et al. (2006) | GSM118374 |
| AT-Se2-sRNA | A. thaliana/seedlings | sRNAseq | Roche/454 | 22,467e | 12,718e | Kasschau et al. (2007) | GSM154375 |
| AT-L1-sRNA | A. thaliana/rosette leaves | sRNAseq | Roche/454 | 186,899e | 67,663e | Rajagopalan et al. (2006) | GSM118373 |
| AT-L2-sRNA | A. thaliana/rosette leaves | sRNAseq | Roche/454 | 15,833e | 8,112e | Kasschau et al. (2007) | GSM154370 |
a
Number of reads mapped to the genome.
b
Number of distinct genomic positions matched by one or more reads. Because SOLiD data were mapped allowing for errors, it is not possible to tally the number of unique reads that were mapped.
c
Number of reads mapped to the sense strand of the transcriptome.
d
Number of distinct 5′ ends matched by one or more reads. Because SOLiD data were mapped allowing for errors, it is not possible to tally the number of unique reads that were mapped.
e
Number of reads present within the GEO-deposited accession.