Table 2.
year | number of samples | range of dates of sample collection | substitution rateb (95% HPD) | TMRCAc (95% HPD) |
---|---|---|---|---|
2005 | 128 | 21 July–4 October | 6.87 × 10−6 (1.11 × 10−6–1.50 × 10−5) | 532 (143–1243) |
2006 | 80 | 13 June–7 September | 13.11 × 10−6 (4.82 × 10−7–2.74 × 10−5) | 408 (92–1253) |
2007 | 46 | 5 July–9 September | 4.48 × 10−6 (6.73 × 10−8–1.38 × 10−5) | 2057 (122–7584) |
all years | 254 | 21 July 2005–9 September 2007 | 4.17 × 10−6 (3.34 × 10−6–5.04 × 10−6) | 1206 (984–1531) |
aAll evolutionary parameters were estimated under the Bayesian skyline plot uncorrelated exponential relaxed clock model.
bMean number of nucleotide substitutions per site per day. HPD: high posterior density.
cMean time to the most recent common ancestor (TMRCA), in days.