Table 1.

Phylodynamic patterns of viruses.

pattern	virus
constant	Canine distemper virus (Pomeroy et al. 2008); Hepatitis B virus (van Houdt et al. 2010);
	Hepatitis C virus (Golemba et al. 2010); HIV-1 (Deng et al. 2008; Tee et al. 2008);
	Measles virus (Pomeroy et al. 2008); Mumps virus (Pomeroy et al. 2008);
	Rabbit haemorrhagic disease virus (Kinnear & Linde 2010); Rabies virus (Hughes et al. 2004; Davis et al. 2007);
	Ross River virus (Jones et al. 2010); Simian foamy virus (Liu et al. 2008);
	St Louis encephalitis virus (Twiddy et al. 2003).
expansion	Hepatitis B virus (Zehender et al. 2008); Hepatitis C virus (Jiménez-Hernández et al. 2007);
	HIV-1 (Worobey et al. 2008); Influenza A (Goñi et al. 2009).
exponential	Dengue virus (Twiddy et al. 2003); Hepatitis C virus (Jiménez-Hernández et al. 2007; Pybus et al.2003, 2005);
	HIV-1 (Lemey et al. 2004; Salemi et al. 2005; Walker et al. 2005; Salemi et al. 2008); Influenza A (Chen & Holmes 2006; Fraser et al. 2009; Rambaut & Holmes 2009); Human rhinovirus (Briese et al. 2008);
	Measles virus (Pomeroy et al. 2008); Rabies virus (Hughes et al. 2004; Davis et al. 2007); West Nile virus (Snapinn et al. 2007).
logistic	Canine parvovirus (Pereira et al. 2007); Dengue virus (Carrington et al. 2005);
	Hepatitis B virus (Zehender et al. 2008); Hepatitis C virus (Verbeeck et al. 2006; Jiménez-Hernández et al. 2007).
	HIV-1 (Robbins et al. 2003; Hu et al. 2005; Walker et al. 2005; Bello et al. 2007; Tee et al. 2008); Human erythrovirus B19 (de Freitas et al. 2008);
	West Nile virus (Snapinn et al. 2007).
piecewise logistic	Hepatitis C virus (Tanaka et al. 2004; Pybus et al. 2003);
piecewise expansion	Hepatitis B virus (Michitaka et al. 2006); Hepatitis C virus (Pybus et al. 2005; Nakano et al. 2004; Kurbanov et al. 2007);
	Hepatitis delta virus (Kurbanov et al. 2007); Hepatitis E virus (Tanaka et al. 2006);
	HIV-1 (Kurbanov et al. 2003); HIV-2 (Lemey et al. 2003a); Infectious bursal disease virus (Hon et al. 2006);
	Japanese encephalitis virus (Twiddy et al. 2003); Rabies virus (Hughes et al. 2004)
two-phase exponential	Dengue virus (Twiddy et al. 2003).
nonparametric
constant	Epizootic haemorrhagic disease virus (Biek 2007);
	St Louis encephalitis virus (Baillie et al. 2008).
constant/exponential phases	Avian metapneumovirus (Padhi & Poss 2009); Dengue virus (Schreiber et al. 2009);
	Feline immunodeficiency virus (Biek et al. 2006);
	Hepatitis C virus (Nakano et al. 2006; Njouom et al. 2007; Njouom et al. 2009; Pybus et al. 2009); HIV-1 (Bello et al. 2009; Pérez-Losada et al. 2010); JC virus (Kitchen et al. 2008);
	Rabies virus (Biek et al. 2007).
decline	Buggy Creek virus (Padhi et al. 2008); Hepatitis A virus (Moratorio et al. 2007);
	Hepatitis B virus (van Ballegooijen et al. 2009); Toscana virus (Zehender et al. 2009)
oscillatory	Dengue virus (Bennett et al. 2009); Influenza A (Rambaut et al. 2008); Influenza B (Chen & Holmes 2008)
	West Nile virus (Amore et al. in press).