Table 3. VjbR and BabR Shared Targets: ORFs Identified by the Proteomic and Transcriptomic Analyses and Regulated by Both LuxR Type Regulators.

	target	identity/similarity/function	ratio ΔvjbR/wt	ratio ΔbabR/wt
Co-regulated targets	BMEI0056	LSU Ribosomal Protein L28P	2.27	1.34
	BMEI0195	ATP-Dependent Clp Protease, ATP-Binding Subunit ClpB	1.26	1.57
	BMEI0223	Membrane Bound Lytic Murein Transglycolase	2.56	1.38
	BMEI0742	Protein Translation Elongation Factor Tu (EF-Tu)	1.81	1.30
	BMEI0753	SSU Ribosomal Protein S7P	1.37	1.26
	BMEI0754	Protein Translation Elongation Factor G (EF-G)	1.71	1.28
	BMEI0874	ATP-Dependent Clp Protease Proteolytic Subunit	1.66	1.49
	BMEI1480	SSU Ribosomal Protein S6P	2.09	1.35
	BMEI1481	SSU Ribosomal Protein S18P	1.76	1.27
	BMEI1747	Aldehyde Dehydrogenase	2.37	1.98
	BMEI1915	SSU Ribosomal Protein S1P	1.26	1.46
	BMEII0593	Glucose ABC Transporter ATPase	2.92	1.93
Differentially regulated targets	BMEI0219	Malonate-Semialdehyde Dehydrogenase (Acylating)/Methylmalonate-Semialdehyde Dehydrogenase (Acylating)	3.27	0.67
	BMEI0469	Purine Nucleoside Permease	0.45	1.35
	BMEI0668	Calcium Binding Protein	5.77	0.59
	BMEI0727	d-Alanine-d-Alanine Ligase A	0.60	1.28
	BMEI0851	Enolase	0.56	1.34
	BMEII0025	Attachment Mediating Protein VirB1 Homologue	0.15	1.43
	BMEII0026	Attachment Mediating Protein VirB2 Homologue	0.11	1.57
	BMEII0027	Channel Protein VirB3 Homologue	0.15	1.56
	BMEII0028	ATPase VirB4 Homologue	0.33	1.56
	BMEII0029	Attachment Mediating Protein VirB5 Homologue	0.26	1.37
	BMEII0030	Channel Protein VirB6 Homologue	0.61	1.26
	BMEII0032	Channel Protein VirB8 Homologue	0.50	1.55
	BMEII0033	Channel Protein VirB9 Homologue	0.72	1.58
	BMEII1047	10 kDa Chaperonin GroES	0.49	2.95
	BMEII1048	60 kDa Chaperonin GroEL	0.35	3.19