Table 5.
Comparison between cell lines--total of preferred classes
| Factor | Cell line | ||
|---|---|---|---|
| GM128 | K562 | Other | |
| GABP | 0.991 | 0.976 | |
| NRSF | 0.844 | 0.862 | |
| SRF | 0.851 | 0.794 | |
| JunD | 0.293 | ||
| cFos | 0.603 | 0.475 | |
| Max | 0.675 | ||
| SREBP1 | 0.742 | ||
| STAT1 | 0.638 | 0.519 | |
| TR4 | 0.870 | 0.871 | |
| GATA1 | 0.736 | ||
| NF-E2 | 0.536 | ||
| TCF7L2 | 0.483 | ||
| NFKB | 0.686 | ||
| YY1 | 0.876 | ||
| ZNF263 | 0.856 | ||
| Count | 5 | 10 | 6 |
| Average | 0.733 | 0.755 | 0.661 |
| Confidence Limit | 0.477 | 0.674 | 0.503 |
This table gives a comparison between cell lines using a representative transcription factor for each family from Table 3. The last row gives the lower 95% confidence limit for the mean of the values in the column based on a one-sided t-test. The calculation includes the anomalously low value for JunD. We conclude that the choice of cell line does not affect the conclusion that TFBSs mainly occur in the preferred classes.