Table 6.
Data Source | Factor | Q | Sites | Pair 2 | Pair 7 | Pair 9 | Pair 14 | Total |
---|---|---|---|---|---|---|---|---|
Note 1 | Note 2 | Note 3 | Note 4 | Note 5 | Note 5 | Note 5 | Note 5 | Note 6 |
HAIB-K562 | GABP | 0.23 | 593 | 0.087 | 0.126 | 0.254 | 0.458 | 0.925 |
HAIB-K562 | NRSF | 0.85 | 1714 | 0.261 | 0.254 | 0.264 | 0.069 | 0.849 |
HAIB-K562 | SRF | 0.76 | 280 | 0.424 | 0.098 | 0.119 | 0.112 | 0.752 |
YALE-GM128 | NFKB | 0.85 | 2267 | 0.336 | 0.169 | 0.132 | 0.021 | 0.658 |
YALE-HCT116 | TCF7L2 | 0.91 | 3075 | 0.280 | 0.116 | 0.057 | 0.012 | 0.466 |
YALE-HepG2 | SREBP1 | 0.57 | 2844 | 0.283 | 0.132 | 0.135 | 0.065 | 0.615 |
YALE-K562b | GATA1 | 0.89 | 3011 | 0.330 | 0.231 | 0.139 | 0.021 | 0.721 |
YALE-K562b | TR4 | 0.35 | 191 | 0.144 | 0.162 | 0.322 | 0.110 | 0.738 |
YALE-K562b | ZNF263 | 0.80 | 4079 | 0.051 | 0.221 | 0.501 | 0.073 | 0.845 |
YALE-K562 | cFos | 0.94 | 3523 | 0.290 | 0.190 | 0.107 | 0.011 | 0.598 |
YALE-K562 | Max | 0.77 | 2453 | 0.237 | 0.121 | 0.193 | 0.065 | 0.615 |
YALE-K562 | NF-E2 | 0.93 | 4380 | 0.275 | 0.152 | 0.086 | 0.011 | 0.524 |
YALE-NT2D1 | YY1 | 0.61 | 1804 | 0.338 | 0.203 | 0.189 | 0.099 | 0.828 |
YALE-K562-Ia30 | STAT1 | 0.86 | 898 | 0.414 | 0.111 | 0.067 | 0.019 | 0.611 |
ORegAnno | CTCF | 0.90 | 4368 | 0.212 | 0.192 | 0.363 | 0.134 | 0.901 |
TRANSFAC | sp1 | 0.41 | 281 | 0.063 | 0.151 | 0.529 | 0.206 | 0.949 |
TRANSFAC | p53 | 0.95 | 579 | 0.271 | 0.210 | 0.075 | 0.004 | 0.560 |
Average of above | 0.253 | 0.167 | 0.208 | 0.088 | 0.715 | |||
Genome proportions | 0.134 | 0.071 | 0.042 | 0.009 | 0.256 | |||
Model proportions | 0.134 | 0.069 | 0.042 | 0.009 | 0.255 | |||
Promoter region | 0.170 | 0.069 | 0.128 | 0.233 | 0.600 |
Note 8) Column 3 gives the proportion, Q, of sites that are more than 1500 bases from a transcription start site, and column 4 gives the number of these sites. Other notes are as for Table 2.