Table 7.
Data Source | Factor | Q | Sites | Pair 2 | Pair 7 | Pair 9 | Pair 14 | Total |
---|---|---|---|---|---|---|---|---|
Note 1 | Note 2 | Note 3 | Note 4 | Note 5 | Note 5 | Note 5 | Note 5 | Note 6 |
HAIB-K562 | GABP | 0.77 | 1964 | 0.045 | 0.007 | 0.071 | 0.869 | 0.991 |
HAIB-K562 | NRSF | 0.15 | 292 | 0.091 | 0.091 | 0.192 | 0.567 | 0.940 |
HAIB-K562 | SRF | 0.24 | 87 | 0.197 | 0.035 | 0.087 | 0.609 | 0.928 |
YALE-GM128 | NFKB | 0.15 | 386 | 0.238 | 0.081 | 0.184 | 0.347 | 0.850 |
YALE-HCT116 | TCF7L2 | 0.09 | 311 | 0.295 | 0.062 | 0.089 | 0.207 | 0.652 |
YALE-HepG2 | SREBP1 | 0.43 | 2114 | 0.174 | 0.036 | 0.141 | 0.560 | 0.911 |
YALE-K562b | GATA1 | 0.11 | 356 | 0.256 | 0.132 | 0.201 | 0.276 | 0.865 |
YALE-K562b | TR4 | 0.65 | 350 | 0.145 | 0.040 | 0.158 | 0.599 | 0.943 |
YALE-K562b | ZNF263 | 0.20 | 1019 | 0.041 | 0.089 | 0.329 | 0.443 | 0.902 |
YALE-K562 | cFos | 0.06 | 223 | 0.242 | 0.137 | 0.176 | 0.133 | 0.688 |
YALE-K562 | Max | 0.23 | 723 | 0.121 | 0.029 | 0.136 | 0.592 | 0.877 |
YALE-K562 | NF-E2 | 0.07 | 320 | 0.249 | 0.106 | 0.120 | 0.225 | 0.699 |
YALE-NT2D1 | YY1 | 0.39 | 1163 | 0.119 | 0.029 | 0.107 | 0.696 | 0.951 |
YALE-K562-Ia30 | STAT1 | 0.14 | 141 | 0.298 | 0.061 | 0.140 | 0.313 | 0.812 |
ORegAnno | CTCF | 0.10 | 490 | 0.110 | 0.081 | 0.258 | 0.486 | 0.935 |
TRANSFAC | sp1 | 0.59 | 412 | 0.033 | 0.024 | 0.198 | 0.722 | 0.977 |
TRANSFAC | p53 | 0.05 | 29 | 0.166 | 0.062 | 0.194 | 0.365 | 0.787 |
Average of above | 0.166 | 0.065 | 0.164 | 0.471 | 0.865 | |||
Genome proportions | 0.134 | 0.071 | 0.042 | 0.009 | 0.256 | |||
Model proportions | 0.134 | 0.069 | 0.042 | 0.009 | 0.255 | |||
Promoter region | 0.170 | 0.069 | 0.128 | 0.233 | 0.600 |
Note 8) Column 3 gives the proportion, Q, of sites that are less than 1500 bases from a transcription start site, and column 4 gives the number of these sites. Other notes are as for Table 2.