TABLE 4.
Polymorphisms found in all sequences analyzed
| Gene model | Location of polymorphism | Polymorphism detected | Lines with polymorphism | Lines without polymorphism |
|---|---|---|---|---|
| CG41265 | +48 (exon 1) | T → A | 45-10, 45-84, 45-87, 34-7 | |
| +94167 (exon 7) | C → T (A → V) | 45-10, 45-84, 45-87, 34-7 | ||
| CG42595 | +22662 (intron 6) | T → C | L2, NC9, NC1, uex34-7 | |
| CG17683 | −142 to −177 | 36 missing nucleotides | NC9, NC109, NC70, NC1, NC38 | 34-13 |
| CG40133 | +1876 (3′ UTR) | G → A | 34-13, NC109 | |
| +8197 (exon 2) | G → T (S → I) | NC9, NC1, Lf | 45-20 | |
| +119 (intron 1) | G → T | 45-20, NC9, NC1, Lf, NC110 | 45-34 | |
| CG40127 | +289 to +293 (intron 2) | ATAC absent | 45-20, 45-34 | |
| +307 (intron 2) | A → C | 45-20, NC9, NC1, Lf, NC110 | ||
| +319 (intron 2) | T → C | 45-20, NC9, NC1, Lf, NC110 | ||
| CG40131 | +235 (exon 1) | G → C (G → R) | 45-20, NC9, NC1, Lf | |
| CG41449 | +186 (exon 1) | C → G (silent) | NC9, NC1, Lf | 45-20 |
| CG17665 | +49 (exon 1) | A → G (I → V) | 45-20, 45-34, 45-61, NC9, NC19, Lf | |
| +4358 (intron 3) | T → C | 45-20, NC9, NC28, NC19, Lf | 45-34, 45-61, 45-71, Lf | |
| +6176 (intron 7) | A → G | 45-20, 45-34, NC9, NC19, Lf | 45-61 | |
| +6460 (intron 8) | G → A | 45-20, 45-34, 45-61, NC9, NC19, Lf |
The location of the polymorphism is written as the number of amino acids downstream (+) or upstream (−) from the predicted translation start site (+0). All polymorphisms are relative to the published genomic sequence.