TABLE 3.

The accuracy of the predictions of total genetic value (±SE) in the TEST1 data set when the training data contained T = 200 individuals and GWBLUP or BayesB is used to estimate the marker effects

	Causative SNPs
	GWBLUP		BayesB
Data	Excluded	Included	Excluded	Included
3 QTL	0.503 ± 0.011	0.508 ± 0.011	0.938 ± 0.013	0.973 ± 0.004
30 QTL	0.491 ± 0.016	0.493 ± 0.010	0.806 ± 0.023	0.826 ± 0.019