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. Author manuscript; available in PMC: 2010 Jun 5.
Published in final edited form as: J Struct Funct Genomics. 2010 Apr 11;11(1):51–59. doi: 10.1007/s10969-010-9086-7

Figure 2.

Figure 2

Overall scheme of the computational structure-based characterization of protein families. START domain sequences and there models, calculated in the SkyLine analysis of a protein structure (PDB id 1LN1, [27]) are retrieved according to a variety of search parameters, including sequence and modeling features. Each model can be manipulated and visualized in a Jmol window, side-by-side with its Verify3D evaluation profile [37]. Links to MarkUs [13] provide access to previously calculated annotation results and the opportunity for further function analysis.