Table 1. START domain leverage and modelability.
PDB id's for the 19 template structures for START database analyzed by SkyLine are listed column1. BA, CSD and BAC in column 2 stand for Birch Antigen START domain, Classical START Domain, and Bacterial START domain, respectively. In column 3 through 7, the structure-based criteria for reliable models are pG ≥0.7 and query_coverage (or coverage of template by sequence) ≥ 75 %.
| START PDB id | START Sub-group | Reliable models, e-value≤0.001 | Reliable models, seqid ≥30% | Reliable models, e-value≥ 0.01 | Reliable models, e-value ≥ 0.1 | Reliable models, “unknown” |
|---|---|---|---|---|---|---|
| 1BV1 | BA | 561 | 458 | 14 | 13 | 21 |
| 1E09 | BA | 672 | 442 | 47 | 34 | 33 |
| 1EM2 | CSD | 651 | 74 | 0 | 0 | 8 |
| 1FM4 | BA | 759 | 448 | 5 | 1 | 33 |
| 1JSS | CSD | 703 | 32 | 2 | 2 | 8 |
| 1LN1 | CSD | 655 | 41 | 1 | 1 | 7 |
| 1T17 | BAC | 338 | 210 | 8 | 4 | 1 |
| 1XDF | BA | 669 | 382 | 32 | 18 | 25 |
| 1XFS | BAC | 927 | 72 | 2 | 1 | 2 |
| 1XN5 | BAC | 860 | 29 | 2 | 1 | 3 |
| 1XN6 | BAC | 867 | 24 | 1 | 0 | 2 |
| 1XUV | BA | 840 | 59 | 2 | 2 | 4 |
| 1Z94 | BA | 944 | 91 | 2 | 1 | 2 |
| 2BK0 | BA | 697 | 379 | 8 | 1 | 24 |
| 2FLH | BA | 755 | 12 | 1 | 1 | 37 |
| 2I9Y | BA | 656 | 65 | 2 | 2 | 25 |
| 2PCS | BAC | 938 | 74 | 2 | 0 | 4 |
| 2PSO | CSD | 516 | 78 | 1 | 1 | 1 |
| 2R55 | CSD | 712 | 46 | 5 | 5 | 7 |
| Total unique | 3827 | 1303 | 104 | 73 | 61 |