Skip to main content
. 2010 May 9;24(5):459–471. doi: 10.1007/s10822-010-9362-4

Table 2.

Successful self- and cross-docking of crystallographic compounds into individual pockets of the proposed NR pocket library

Receptor Self-docking Fraction of correctly predicted structure/ligand pairs in single-receptor cross-docking
RMSD Self-docking included (%) Self-docking excluded (%)
wtMR+ 0.65±0.60 100 100
S810LMR+ 0.35±0.07 100 100
TRβ+ 0.44±0.06 93 91
PR+ 0.56±0.12 55 33
GR+ 0.62±0.25 100 100
RARγ+ 0.80±0.41 100 100
PPARδ+ 1.20±0.41 55 33
PPARα+ 0.65±0.56 75 75
PPARγ+ 0.77±0.50 73 62
VDR+ 1.31±0.60 100 100
RXRα+ 0.61±0.27 76 70
wtAR+ 0.38±0.12 93 91
T877AAR+ 0.52±0.38 66 50
ERα− 1.17±0.59 68 58
ERα+ 1.13±0.59 75 66
ERβ− 0.75±0.45 66 50
ERβ+ 0.38±0.14 88 83

RMSD of self-docking is described by average across all pockets in the ensemble ± standard deviation