Table 2.
Successful self- and cross-docking of crystallographic compounds into individual pockets of the proposed NR pocket library
Receptor | Self-docking | Fraction of correctly predicted structure/ligand pairs in single-receptor cross-docking | |
---|---|---|---|
RMSD | Self-docking included (%) | Self-docking excluded (%) | |
wtMR+ | 0.65±0.60 | 100 | 100 |
S810LMR+ | 0.35±0.07 | 100 | 100 |
TRβ+ | 0.44±0.06 | 93 | 91 |
PR+ | 0.56±0.12 | 55 | 33 |
GR+ | 0.62±0.25 | 100 | 100 |
RARγ+ | 0.80±0.41 | 100 | 100 |
PPARδ+ | 1.20±0.41 | 55 | 33 |
PPARα+ | 0.65±0.56 | 75 | 75 |
PPARγ+ | 0.77±0.50 | 73 | 62 |
VDR+ | 1.31±0.60 | 100 | 100 |
RXRα+ | 0.61±0.27 | 76 | 70 |
wtAR+ | 0.38±0.12 | 93 | 91 |
T877AAR+ | 0.52±0.38 | 66 | 50 |
ERα− | 1.17±0.59 | 68 | 58 |
ERα+ | 1.13±0.59 | 75 | 66 |
ERβ− | 0.75±0.45 | 66 | 50 |
ERβ+ | 0.38±0.14 | 88 | 83 |
RMSD of self-docking is described by average across all pockets in the ensemble ± standard deviation