Fig. 4.

(a) Comparison of SNPs identified from the second pooled sequencing dataset using two independent statistics: contingency table P-value and quality values-based P-value. Only SNPs that were also identified from the individual sequencing of the 48 samples are shown. (b) Precision–recall curve for SNPs identified by CRISP from the second pooled dataset using different thresholds for the two P-values: contingency table P-value and the quality values-based P-value. The P-value thresholds (log base 10) are shown for each point on the curve.