Table 3.
Species | Isoform | Exon1 | Exon2 | Exon3 | Exon4 | Exon5 | Exon6 | Exon7 |
---|---|---|---|---|---|---|---|---|
S. aurata | TGF-β6 | 361 | 164 | 133 | 111 | 181 | 154 | 156 |
S. aurata | TGF-β1 | 595 | 235 | 151 | 111 | 48 | - | - |
O. mykiss | TGF-β | 340 | 270 | 78 | 151 | 151 | 111 | 45 |
D. rerio | TGF-β3 | 346 | 164 | 130 | 108 | 172 | 154 | 156 |
D. rerio | predictedTGF-β2 | 349 | 164 | 133 | 111 | 178 | 151 | 156 |
G. aculeatus | predictedTGF-β | 355 | 164 | 136 | 111 | 181 | 154 | 156 |
T. rubripes | predictedTGF-β2 | 364 | 164 | 133 | 111 | 175 | 154 | 156 |
T. rubripes | predictedTGF-β | 361 | 164 | 133 | 111 | 181 | 154 | 156 |
O. latipes | predictedTGF-β2 | 361 | 164 | 133 | 111 | 181 | 154 | 156 |
T. nigroviridis | predictedTGF-β | 361 | 164 | 133 | 111 | 181 | 154 | 156 |
H. Sapiens | TGF-β1 | 355 | 161 | 118 | 78 | 148 | 154 | 156 |
M. musculus | TGF-β2 | 346 | 164 | 133 | 111 | 178 | 154 | 156 |
H. Sapiens | TGF-β3 | 352 | 164 | 130 | 108 | 172 | 154 | 156 |
G. gallus | TGF-β2 | 343 | 164 | 133 | 111 | 175 | 154 | 156 |
G. gallus | TGF-β3 | 352 | 164 | 130 | 108 | 172 | 154 | 156 |
X. laevis | TGF-β5 | 334 | 158 | 118 | 75 | 151 | 154 | 156 |
Accession Nos (or gene ID from Ensembl): S. aurata TGF-β6, FJ966093; S. aurata TGF-β1, AF510084; O. mykiss TGF-β, AJ007836; D. rerio TGF-β3, AY744922 to AY744929; D. rerio predictedTGF-β2, LOC559723; G. aculeatus, predictedTGF-β, ENSGACG00000016971; T. Rubripes predictedTGF-β2, ENSTRUG00000008295; T. rubripes predictedTGF-β, ENSTRUG00000013167; O. latipes predictedTGF-β2, ENSORLG00000002336; T. nigroviridis predictedTGF-β, GSTENG10000619001; H. sapiens TGF-β1, X05839/X05840/X05843/X05844/X05849/X05850; H. sapiens TGF-β3, X14149; M. musculus TGF-β2, NM_009367; G. gallus TGF-β2, X59071/X59080/X59081/X59082; G. gallus TGF-β3, X58127/X60091/X60090; X. laevis TGF-β5, AF009331/AF009332/AF009333/AF009334/AF009335.
The novel TGF β6 in the six fish species is shown in bold letters. Identical exon length of the novel fish TGF-β6 in the six fish species is also shown in bold letters.