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. Author manuscript; available in PMC: 2010 Jun 8.
Published in final edited form as: Mar Biotechnol (NY). 2009 Feb 10;11(5):650–668. doi: 10.1007/s10126-009-9181-6

Table 1.

Accession number, identity, forward primer sequence, reverse primer sequence, annealing temperature (Ta), and number of cycles (C) for quantitative RT-QPCR assays

EST
Putative identity
Forward primer
Reverse primer
Ta C Efficiency
AB122066 F: GGAAGCTGCTGAGATGGGAA 1.98±0.004
Elongation factor 1α R: TCCAACACCCAGGCGTATTT
AJ305315 F: AGGGCATTTCATGTCCGAAG 58 40 2.01±0.002
Heat shock protein 70 R: TGCTCAGACATCCAAGGAAGG
AJ565456 F: ACCACAAAAGCAGTTGCCGT 58 40 2.08±0.001
S-crystallin R: TGAGGGATAAGGCGACCATC
AJ565627 F: GTACTTCAATGAGATGCCGTGG 59 40 1.84±0.153
Nucleoredoxin R: AGGTCACGTTCACTGAAGGGA
AJ565582 F: CCTTCGGATCGTCTGGAGAA 59 40 1.98±0.004
Delta-9 desaturase R: CCGAAGTGTAAAAGAGCCATCAG
AM237676 F: GCCAAACCTCGCCTACCTTC 58 40 2.00±0.004
Peroxinectin R: GTGGAGTTGACGCGTGACATA
AM237729 F: GAGATCGTGGAGGACAAGAAAGA 58 45 1.97±0.005
No match R: CTGCTCCGATCTCGTCAGC
AM237796 F: GCTGTGGAGTGGTTACCAGGA 59 40 2.01±0.004
Galectin R: GAGAGTAACCCAGCTCCCCG
BQ426456 F: AGGCCATTGAAGCCACAAAT 58 40 2.00±0.005
Neuropeptide Y R: TCCACAAAGGACTCTTGCCAT
BQ426550 F: TGACGCAATGGATTTTCTGC 58 40 1.86±0.005
Heat shock protein 27 R: GCCTGGTATCCAGGTCGGTAG
BQ426623 F: GCGCGACATTTTCGATTTTC 59 40 1.88±0.007
No match R: CCATTGGTGATGACGTAACGC
BQ426658 F: AGAAGTGTGGAGAAATTTTGTCCAG 59 40 1.92±0.005
No match R: TGGGATCAGATCCCATGCTC
BQ426884 F: ACGATGTCAGGGACAACTTTCTGT 58 45 1.96±0.002
No match R: CGCAGAGGTAATCTTTTAAACGTCA
BQ426927 F: GACATGGTCGTCCAGATCGG 59 40 2.02±0.005
SOCS2 R: CCACCCTGATTGACTTAACGTGA
CX069163 F: TATGAAGTAGCAGCATGATGACTCC 58 40 2.02±0.004
Collagen R: TCGTGGCTACCTAATGGCG
CX069133 F: GTTCCTGCCACGACCTGAGT 58 40 2.01±0.004
Cystatin B R: GCTGGACACTTACACCCCAGTC

Mean efficiency (Er) ± SEM was calculated by using the software LinReg PCR (Ramakers et al. 2003). Target concentration was normalized to that of the endogenous control ef1 (AB122066)