Table 4.
Accession number, cluster (“Cl”; refers to Fig. 1), Q-value, identity, species match, and accession number, and E-scores of ESTs for which vsn-adjusted signals in gill of oysters differed significantly (Q<0.05)
| Accession | Cl. | Q | Identity | Species | Accession | E |
|---|---|---|---|---|---|---|
| Among sampling times | ||||||
| Molecular chaperones | ||||||
| AJ305315 | E | 1.E-10 | Heat shock cognate 70 | Crassostrea gigas | AJ305315 | 0 |
| AJ565518 | E | 1.E-03 | EKN1 | Strongylocentrotus purpuratus | XP_787717 | 4.E-47 |
| AM237785 | A | 6.E-14 | Heat shock protein 27 | Carassius auratus | AAV97950 | 8.E-07 |
| BQ426550 | A | 1.E-04 | Heat shock protein 27 | Homo sapiens | AAA62175 | 8.E-07 |
| BQ426606 | E | 3.E-08 | Heat shock protein 90 | Chlamys farreri | AAR11781 | 6.E-112 |
| BQ426928 | E | 3.E-09 | Heat shock protein 70 | Crassostrea gigas | AF144646 | 1.E-114 |
| CB617443 | D | 1.E-09 | Heat shock protein 90 | Crassostrea gigas | ABS18268 | 2.E-110 |
| CB617445 | NA | 4.E-02 | Chaperonin subunit 6 | Nasonia vitripennis | XP_001606486 | 3.E-27 |
| CD648461 | NA | 1.E-05 | Small heat shock protein | Uncultured cnidarian | ABA42878 | 3.E-10 |
| CV089199 | D | 6.E-06 | Heat shock cognate 72 | Crassostrea gigas | AAD31042 | 6.E-133 |
| Protein degradation | ||||||
| BQ427148 | NA | 4.E-02 | Siah-interacting protein | Xenopus laevis | NP_000180214 | 8.E-18 |
| CB617402 | C | 2.E-06 | UBE 1 | Xenopus laevis | AAH47256 | 2.E-52 |
| CB617456 | C | 3.E-06 | Valosin-containing protein | Homo sapiens | AAH07562 | 4.E-84 |
| CV132727 | A | 2.E-02 | Ribosomal Protein L40a | Lycosa singoriensis | ABX75386 | 3.E-35 |
| Growth and reproduction | ||||||
| BQ426456 | NA | 2.E-03 | Neuropeptide Y | Haliotis discus hannai | ABH10673 | 7.E-12 |
| BQ426927 | E | 8.E-03 | SOCS2 | Apis mellifera | XP_394764 | 4.E-13 |
| CK172319 | C | 4.E-07 | Temptin | Aplysia brasiliana | AAS92605 | 6.E-27 |
| Antioxidant/detoxification | ||||||
| AJ565456 | B | 1.E-03 | S-crystallin | Strongylocentrotus purpuratus | XP_791441 | 9.E-33 |
| CX069146 | B | 3.E-03 | Glutathione peroxidase | Hymeniacidon perlevis | ABB91779 | 4.E-53 |
| Lipid metabolism | ||||||
| AJ565582 | NA | 8.E-14 | Delta-9-desaturase | Danio rerio | NP_942110 | 8.E-08 |
| BQ426641 | B | 9.E-03 | Patatin-like phospholipase | Strongylocentrotus purpuratus | XP_001185333 | 5.E-47 |
| BQ426935 | C | 6.E-03 | SREBP-1 | Gallus gallus | NP_989457 | 2.E-41 |
| CB617498 | C | 9.E-12 | Delta-9-desaturase | Ctenopharyngodon idella | CAB53008 | 4.E-69 |
| CK172312 | B | 4.E-03 | Fatty acid binding protein | Crassostrea gigas | AAT44355 | 5.E-08 |
| Cellular immunity | ||||||
| AJ565627 | E | 6.E-14 | Nucleoredoxin | Strongylocentrotus purpuratus | XP_781174 | 3.E-30 |
| AM237796 | C | 2.E-02 | Galectin 4 | Crassostrea gigas | CAD79473 | 4.E-88 |
| BQ427041 | B | 2.E-03 | 5-lipoxygenase | Strongylocentrotus purpuratus | XP_001198535 | 3.E-24 |
| CB617516 | B | 3.E-05 | Protein,COMM domain | Xenopus laevis | NP_001087091 | 8.E-44 |
| CX069133 | C | 5.E-08 | Cystatin B | Gallus gallus | XP_416492 | 3.E-18 |
| RNA transcription/protein translation | ||||||
| CD648403 | D | 2.E-08 | FUSE binding protein 1 | Xenopus tropicalis | NP_989293 | 6.E-08 |
| CD649011 | B | 5.E-02 | Y-box factor protein | Lymnaea stagnalis | AAT97092 | 6.E-31 |
| CV087081 | B | 6.E-03 | RPS27-1 | Crassostrea gigas | CAD91436 | 0 |
| CV087137 | A | 1.E-02 | 18S rRNA gene | Crassostrea gigas | AM182263 | 0 |
| CX069191 | NA | 3.E-02 | Ribosomal protein P1 | Biomphalaria glabrata | AAZ39530 | 4.E-24 |
| Cytoskeletal organization | ||||||
| AJ565479 | NA | 2.E-03 | Fascin homolog 2 | Xenopus tropicalis | NP_001093724 | 1.E-60 |
| BQ426318 | C | 5.E-02 | Ankyrin w/MYND | Bos taurus | NP_00168852 | 1.E-52 |
| BQ426459 | A | 6.E-03 | Ankyrin 2,3/unc44 | Strongylocentrotus purpuratus | XP_001179527 | 3.E-20 |
| BQ426555 | B | 5.E-02 | Arp2/3 16 kd subunit | Aedes aegypti | EAT39104 | 2.E-10 |
| BQ426750 | E | 9.E-04 | Transgelin | Bombyx mori | NP_001040372 | 7.E-46 |
| BQ426862 | E | 5.E-05 | Profilin | Entamoeba histolytica | CAA62418 | 5.E-08 |
| CB617442 | NA | 1.E-03 | Tubulin β5 | Crassostrea gigas | AAU93877 | 1.E-65 |
| Other processes | ||||||
| AM237712 | NA | 6.E-12 | Inhibitor of apoptosis | Ochlerotatus triseriatus | AAL46972 | 2.E-12 |
| BQ426894 | NA | 9.E-03 | Hypothet. dehydrogenase | Gallus gallus | XP_426310 | 2.E-16 |
| BQ426907 | C | 1.E-02 | Arginase | Equus caballus | XP_001503335 | 8.E-58 |
| BQ426918 | B | 3.E-02 | Aldehyde dehydrogenase | Mus musculis | NP_082546 | 3.E-42 |
| BQ426932 | B | 1.E-04 | Diaphorase 1 | Xenopus laevis | NP_001080477 | 2.E-84 |
| BQ427069 | NA | 2.E-03 | Alcohol dehydrogenase | Lysiphlebus testaceipes | AAY63990 | 6.E-104 |
| CD526814 | F | 8.E-15 | Senescence associated | Brugia malayi | EDP31077 | 2.E-55 |
| CD526816 | F | 6.E-14 | Tetraspanin 66E | Drosophila melanogaster | NP_523985 | 2.E-07 |
| CD647828 | NA | 3.E-02 | Bm1_17870 | Brugia malayi | EDP36122 | 6.E-22 |
| CF369127 | B | 1.E-02 | LOC496342 protein | Strongylocentrotus purpuratus | XP_792838 | 3.E-46 |
| AJ565488 | E | 4.E-02 | Not known | |||
| ESTs with no match in Genbank | ||||||
| AJ565533 | A | 1.E-06 | Not known | |||
| AJ565662 | E | 7.E-03 | Not known | |||
| AJ565673 | B | 1.E-03 | Not known | |||
| AJ565697 | A | 5.E-24 | HSP24 | Branchiostoma lan | CAE83570 | 8.E-02 |
| AJ565827 | NA | 2.E-20 | Not known | |||
| AJ565831 | A | 9.E-10 | Not known | |||
| AJ565846 | NA | 3.E-07 | Not known | |||
| AM237667 | A | 1.E-04 | Not known | |||
| AM237694 | NA | 2.E-09 | Not known | |||
| AM237730 | A | 5.E-10 | Not known | |||
| AM237767 | A | 5.E-14 | Not known | |||
| AM237771 | NA | 2.E-12 | Not known | |||
| BG624437 | B | 8.E-03 | Not known | |||
| BG624595 | A | 5.E-10 | Not known | |||
| BG624747 | A | 1.E-03 | Not known | |||
| BQ426330 | C | 4.E-02 | Not known | |||
| BQ426395 | NA | 3.E-04 | tRNA transferase | Nematostella vectensis | XP_001626290 | 4.E-04 |
| BQ426399 | NA | 2.E-05 | Not known | |||
| BQ426402 | C | 6.E-03 | Not known | |||
| BQ426405 | C | 7.E-04 | Not known | |||
| BQ426413 | A | 2.E-17 | Not known | |||
| BQ426454 | NA | 2.E-02 | Not known | |||
| BQ426620 | A | 1.E-07 | Not known | |||
| ESTs with no match in Genbank, continued | ||||||
| BQ426623 | B | 2.E-02 | Not known | |||
| BQ426654 | C | 9.E-08 | Not known | |||
| BQ426851 | NA | 2.E-14 | Transcription factor | Ciona intestinalis | BAE06318 | 5.E-04 |
| BQ426884 | NA | 5.E-09 | Not known | |||
| BQ426924 | NA | 9.E-04 | Not known | |||
| BQ426995 | NA | 1.E-06 | Not known | |||
| BQ427058 | NA | 3.E-18 | Not known | |||
| BQ427084 | NA | 1.E-02 | Not known | |||
| BQ427134 | NA | 2.E-03 | Not known | |||
| BQ427151 | A | 9.E-09 | Uroplakin 1 | Heliocidaris tuberculata | ABE27955 | 1.E-04 |
| BQ427169 | NA | 9.E-06 | Not known | |||
| CB617327 | NA | 5.E-03 | Not known | |||
| CB617408 | D | 7.E-08 | Not known | |||
| CB617424 | NA | 3.E-04 | Not known | |||
| CB617426 | D | 5.E-14 | Not known | |||
| CB617465 | C | 2.E-04 | Not known | |||
| CB617473 | NA | 1.E-05 | Not known | |||
| CB617482 | NA | 1.E-06 | Not known | |||
| CB617484 | NA | 4.E-04 | Not known | |||
| CB617540 | B | 1.E-04 | Not known | |||
| CD526789 | F | 9.E-09 | Not known | |||
| CD526790 | F | 4.E-08 | Not known | |||
| CD526794 | A | 3.E-04 | Not known | |||
| CD526795 | NA | 8.E-06 | Not known | |||
| CD526862 | F | 9.E-14 | Not known | |||
| CD526863 | F | 3.E-20 | Not known | |||
| CD526872 | F | 1.E-06 | Not known | |||
| CD648405 | E | 3.E-02 | Not known | |||
| CD648964 | NA | 4.E-02 | Not known | |||
| CK172325 | NA | 9.E-15 | Not known | |||
| CK172347 | NA | 1.E-02 | Not known | |||
| CK240435 | NA | 4.E-03 | Not known | |||
| CV132419 | A | 2.E-05 | Not known | |||
| CV132796 | NA | 8.E-03 | Not known | |||
| CV132891 | C | 5.E-03 | Not known | |||
| Between family types or the interaction of time and family type | ||||||
| ESTs with significant effect of family type | ||||||
| AM237676 | NA | 3.E-02 | Peroxinectin | Pacifastacus leniusculus | CAA62752 | 6.E-29 |
| AM237729 | NA | 3.E-02 | Not known | |||
| BQ426658 | NA | 3.E-03 | Not known | |||
| CX069163 | NA | 6.E-03 | Collagen-like protein | Suberites domuncula | CAC81019 | 7.E-09 |
| ESTs with significant interaction of time and family type | ||||||
| BQ426623 | NA | 2.E-02 | Not known | |||
Each EST has been grouped according to the functional categories listed in Table 3