Table 2.
AGP-encoding genes identified in the rice genome
| Genea | Subfamilyb | RGAP locusc | RAP-DB locusd | Chromosome locatione | Size (aa)f | GPIg | Evidenceh |
| OsAGP1 | C | NA | Os08g0482300 | Chr8:23845140, 23845908 | 146 | Y | A B C D E |
| OsAGP2 | C | LOC_Os01g71170 | Os01g0937900 | Chr1:41178390, 41179324 | 158 | Y | B D E |
| OsAGP3 | C | NA | Os03g0188500 | Chr3: 4633965, 4634593 | 124 | Y | A B C D E |
| OsAGP4 | C | LOC_Os04g37770 | NA | Chr4:22266907, 22267580 | 131 | Y | C D |
| OsAGP5 | C | NA | Os04g0545250 | Chr4:27141445, 27142670 | 298 | Y | A B C |
| OsAGP6 | C | LOC_Os05g37110 | Os05g0443200 | Chr5:21629021, 21629428 | 135 | Y | C |
| OsAGP7 | C | LOC_Os06g17450 | Os06g0284900 | Chr6:10125749, 10126413 | 128 | Y | B C E |
| OsAGP8 | C | LOC_Os07g28660 | Os07g0469800 | Chr7:16774201, 16774828 | 179 | Y | C |
| OsAGP9 | C | NA | Os10g0377150 | Chr10:12281284, 12281703 | 139 | Y | NA |
| OsAGP10 | C | LOC_Os08g38250 | Os08g0490400 | Chr8:24242332, 24242931 | 199 | Y | C E |
| OsAGP11 | C | LOC_Os04g41480 | Os04g0492200 | Chr4:24404213, 24404920 | 235 | Y | C E |
| OsAGP12 | KC | LOC_Os01g02010 | Os01g0110200 | Chr1:541987, 543510 | 240 | Y | A B C E |
| OsAGP13 | KC | LOC_Os07g40130 | Os07g0590800 | Chr7:24077193, 24079058 | 230 | Y | A B C D E |
| OsAGP14 | Pep | LOC_Os01g37950 | Os01g0559900 | Chr1:21260852, 21261347 | 70 | N | A B C E |
| OsAGP15 | Pep | LOC_Os01g40950 | Os01g0592500 | Chr1:23166562, 23167281 | 72 | N | A B C D E |
| OsAGP16 | Pep | Os01g46850 | Os01g0657000 | Chr1:26721684, 26723875 | 69 | Y | A B C E |
| OsAGP17 | Pep | Os01g55220 | Os01g0756900 | Chr1:31765586, 31765798 | 70 | Y | A B C E |
| OsAGP18 | Pep | LOC_Os01g57030 | Os01g0778300 | Chr1:32943973, 32944508 | 68 | Y | B C D |
| OsAGP19 | Pep | LOC_Os01g57040 | Os01g0778400 | Chr1:32945415, 32945896 | 68 | Y | C |
| OsAGP20 | Pep | LOC_Os02g16500 | Os02g0264800 | Chr2:9417103, 9418631 | 73 | N | A B C E |
| OsAGP21 | Pep | LOC_Os02g48710 | Os02g0718600 | Chr2:29807343, 29807886 | 69 | Y | A B C D E |
| OsAGP22 | Pep | NA | Os02g0718100 | Chr2:29799080, 29799676 | 60 | Y | A B C D E |
| OsAGP23 | Pep | LOC_Os05g12580 | Os05g0217000 | Chr5:7219499, 7219837 | 67 | Y | A B C E |
| OsAGP24 | Pep | LOC_Os06g21400 | Os06g0318800 | Chr6:12358337, 12359021 | 65 | Y | A B C D E |
| OsAGP25 | Pep | LOC_Os06g21410 | Os06g0318900 | Chr6:12365595, 12367161 | 74 | N | C D E |
| OsAGP26 | Pep | LOC_Os06g30920 | Os06g0505700 | Chr6:17983456, 17983849 | 77 | Y | A B C E |
| OsAGP27 | Pep | LOC_Os07g38630 | Os07g0573900 | Chr7:23201833, 23202319 | 64 | Y | B C D E |
| OsAGP28i | Pep | NA | NA | Chr5:26814680, 26815094 | 63 | Y | A |
| OsAGP29 | NC | LOC_Os01g42210 | Os01g0607100 | Chr1:23918314, 23920085 | 221 | Y | C E |
| OsAGP30 | NC | LOC_Os02g10240 | Os02g0196100 | Chr2:5364379, 5366226 | 229 | N | A B C E |
| OsAGP31 | NC | LOC_Os03g63540 | Os03g0852400 | Chr3:35888283, 35889672 | 219 | N | A B C D E |
| OsELA1 | eNod | LOC_Os01g54430 | Os01g0748150 | Chr1:31316996, 31318114 | 237 | Y | A B D E |
| OsELA2 | eNod | LOC_Os02g06670 | Os02g0162200 | Chr2:3353562, 3354820 | 261 | Y | C E |
| OsELA3 | eNod | LOC_Os06g46740 | Os06g0681200 | Chr6:28387298, 28388576 | 279 | Y | A B C E |
| OsLLA1 | nsLTP I | LOC_Os03g26820 | Os03g0385400 | Chr3:15306262, 15308462 | 178 | Y | A B C D E |
| OsLLA2 | nsLTP I | LOC_Os03g46180 | Os03g0664600 | Chr3:26112985, 26114326 | 228 | Y | C D E |
| OsLLA3 | nsLTP II | LOC_Os04g52250 | Os04g0612300 | Chr4:30866056, 30866925 | 202 | N | B C |
| OsLLA4 | nsLTP II | LOC_Os06g46780 | Os06g0681500 | Chr6:28405288, 28406220 | 268 | N | C |
| OsLLA5 | nsLTP II | LOC_Os06g46870 | Os06g0682750 | Chr6:28447781, 28448967 | 270 | N | C E |
| OsLLA6 | nsLTP I | LOC_Os07g07790 | Os07g0174400 | Chr7:3909569, 3910639 | 188 | Y | C D E |
| OsLLA7 | nsLTP I | LOC_Os07g43290 | Os07g0625800 | Chr7:25919683, 25921877 | 177 | Y | A B C D E |
| OsLLA8 | nsLTP II | LOC_Os10g11370 | Os10g0191100 | Chr10:6319745, 6322898 | 357 | N | C E |
| OsFLA1 | Fas III | LOC_Os04g48490 | Os04g0574200 | Chr4:28725108, 28726790 | 431 | Y | A B C E |
| OsFLA2 | Fas III | LOC_Os03g03600 | Os03g0128000 | Chr3:1578312, 1579906 | 401 | Y | A B C D E |
| OsFLA3 | Fas III | LOC_Os08g23180 | Os08g0321000 | Chr8:13982326, 13985506 | 415 | Y | A B C E |
| OsFLA4 | Fas I | LOC_Os08g38270 | Os08g0490600 | Chr8:24249970, 24251221 | 271 | Y | A B C E |
| OsFLA5 | Fas I | LOC_Os08g39270 | Os08g0502400 | Chr8:24815594, 24817738 | 274 | Y | A B C E |
| OsFLA6 | Fas I | LOC_Os05g48900 | Os05g0563600 | Chr5:27989048, 27990300 | 272 | Y | A B C E |
| OsFLA7 | Fas I | LOC_Os01g47780 | Os01g0668100 | Chr1:27339855, 27340906 | 247 | Y | A B C D E |
| OsFLA8 | Fas I | LOC_Os01g06580 | Os01g0159200 | Chr1:3096346, 3097527 | 269 | Y | A B C D E |
| OsFLA9 | Fas I | LOC_Os05g07060 | Os05g0163300 | Chr5:3715739, 3716868 | 275 | Y | A B C D E |
| OsFLA10 | Fas I | LOC_Os09g30010 | Os09g0476800 | Chr9:18256643, 18257801 | 273 | Y | A B C E |
| OsFLA11 | Fas III | LOC_Os09g07350 | Os09g0248100 | Chr9:3653972, 3657804 | 401 | Y | A B C E |
| OsFLA12 | Fas III | LOC_Os01g62380 | Os01g0841100 | Chr1:36098359, 36103250 | 427 | Y | A B C D E |
| OsFLA13 | Fas I | LOC_Os04g39600 | Os04g0472200 | Chr4:23414397, 23415562 | 263 | Y | A B C E |
| OsFLA14 | Fas I | LOC_Os04g39590 | Os04g0472100 | Chr4:23412950, 23414118 | 277 | Y | A B C E |
| OsFLA15 | Fas I | LOC_Os02g20560 | Os02g0308800 | Chr2:12127908, 12129258 | 268 | Y | A B C E |
| OsFLA16 | Fas IV | LOC_Os07g06680 | Os07g0160600 | Chr7:3257238, 3261152 | 479 | N | A B C D E |
| OsFLA17 | Fas IV | LOC_Os03g57490 | Os03g0788700 | Chr3:32771257, 32775727 | 479 | N | A B C E |
| OsFLA18 | Fas I | LOC_Os05g48890 | Os05g0563550 | Chr5:27984690, 27985698 | 251 | Y | A B C E |
| OsFLA19 | Fas I | LOC_Os02g20540 | Os02g0308400 | Chr2:12113830, 12114971 | 267 | Y | A B C E |
| OsFLA20 | Fas II | LOC_Os02g26320 | Os02g0461500 | Chr2:15453153, 15454310 | 304 | Y | A B C E |
| OsFLA21 | Fas II | LOC_Os02g49420 | Os02g0726000 | Chr2:30192724, 30193979 | 266 | Y | A B C E |
| OsFLA22 | Fas II | LOC_Os02g26290 | Os02g0461000 | Chr2:15430699, 15431764 | 213 | N | A B C E |
| OsFLA23 | Fas I | LOC_Os06g17460 | Os06g0285100 | Chr6:10130034, 10130805 | 211 | Y | E |
| OsFLA24 | Fas IV | LOC_Os03g57460 | Os03g0788600 | Chr3:32749877, 32753506 | 474 | N | A B C E |
| OsFLA25 | Fas II | LOC_Os06g44660 | Os06g0656800 | Chr6:26956539, 26957614 | 289 | Y | A B C E |
| OsFLA26 | Fas III | LOC_Os05g38500 | Os05g0459700 | Chr5:22524615, 22526317 | 472 | N | A B C E |
| OsFLA27 | Fas I | LOC_Os09g30486 | Os09g0482780 | Chr9:18610276, 18612149 | 267 | N | A B C E |
a
Systematic designation given to rice AGPs. FLAs that have previously been identified by bioinformatic analysis are indicated in bold (Faik et al, 2006); β-GlcY-reactive AGPs are indicated in bold and underlined (Mashiguchi et al., 2004).
b
C, classical AGP; KC, Lys-rich classical AGP; Pep, AG peptide; NC, non-classical AGP; eNod, early nodulin-like AGP; nsLTP, non-specific lipid transfer protein-like AGP; Fas, fasciclin-like AGP.
c,dLocus identity no. assigned by cRGAP and dRAP-DB, which could be converted by ID converter (http://rapdb.dna.affrc.go.jp/tools/converter/).
e
Chromosomal localization of rice AGP-encoding genes.
f
Length of the open reading frame in amino acids.
g
GPI anchor signal predicted by big-PI (http://mendel.imp.ac.at/gpi/plant_server.html); Y, yes, N, no.
h
Evidence for gene expression from (A) full-length cDNA, (B) ESTs, (C) MPSS tags, (D) serial analysis of gene expression (SAGE), and (E) microarray data.
i
OsAGP28 does not exist in RGAP and RAP-DB.
NA, not available.