Table 2.
Putative small GTPases from peach (Prunus persica), accession numbers, and their closest Arabidopsis homologues
Prunus persica GTPases | Prunus persica accession no.a | Arabidopsis closest homologue | Arabidopsis AGI gene |
PpRABA1-1 | TA5861_3760b | AtRABA1f | At5g60860 |
PpRABA1-2 | TA7012_3760b | AtRABA1c | At5g45750 |
PpRABA2 | TA4712_3760b | AtRABA2a | At1g09630 |
PpRABA4 | TA4817_3760b | AtRABA4a | At5g65270 |
PpRABA5 | TA5151_3760b | AtRABA5e | At1g05810 |
PpRABA6 | AJ823264c | AtRABA6a | At1g73640 |
2200746346d | |||
2167819167d | |||
PpRABB1 | TA4959_3760b | AtRABB1b | At4g35860 |
PpRABC1 | TA6278_3760b | AtRABC1 | At1g43890 |
2187916258d | |||
PpRABC2 | TA5305_3760b | AtRABC2a | At5g03530 |
PpRABD2-2 | TA3537_3760b | AtRABD2c | At4g17530 |
PpRABD2-1 | TA4413_3760b | AtRABD2c | At4g17530 |
PpRABE1 | TA5649_3760b | AtRABE1a | At3g53610 |
PpRABF2 | BUO42728c | AtRABF2a | At5g45130 |
PpRABG3 | TA6078_3760b | AtRABG3f | At3g18820 |
PpARFA1-1 | TA3041_3760b | AtARFA1f | At1g10630 |
PpARFA1-2 | TA4389_3760b | AtARFA1b | At5g14670 |
PpARLA1 | BU044827c | AtARLA1c | At3g49870 |
PpARFC1 | TA5387_3760b | AtARFC1 | At3g22950 |
PpARLB1 | BU043462c | AtARLB1 | At5g52210 |
2167362775d | |||
2167505212d | |||
PpSARA1 | TA5313_3760b | AtSAR1 | At4g02080 |
PpARLC1 | DY653778c | AtARLC1 | At2g18390 |
2126540771d | |||
AJ825266c | |||
PpROP3 | TA3784_3760b | AtROP3 | At2g17800 |
PpROP4 | TA6502_3760b | AtROP4 | At1g75840 |
AJ870547c | |||
PpRAN3 | TA3256_3760b | AtRAN3 | At5g55190 |
The names of peach GTPases, belonging to the RAB, ARF/ARL/SAR, ROP, and RAN families, are listed in the first column.
Details of the accession numbers of sequences employed to obtain the corresponding GTPase coding sequences. Accession numbers identified by different superscript letters refer to different databases:
sequences from the TIGR database, including plant transcript assemblies (TAs) from expressed transcripts collected from dbEST (ESTs) and from the NCBI GenBank nucleotide database;
singletons that are not assembled into TAs and retain their GenBank accession numbers as identifiers;
sequences from the WGS-Prunus persica Trace Archive.
In the third and fourth column the closest, Arabidopsis homologues and their corresponding AGI numbers are given.