Table 5.
List of 54 SNPs in 43 genes, along with the corresponding correlation coefficient between minor allele frequency and antibody response, that showed significant association with antibody response in half-sample 1
Chromosome no. | Gene | SNP rs # | Corr. coeff. (r) | Chromosome no. | Gene | SNP rs # | Corr. coeff. (r) |
---|---|---|---|---|---|---|---|
1 | TNFRSF8 | 12736809 | −0.94 | 4 | IRF2 | 12512614 | −0.96 |
1 | TNFRSF1B | 505844 | −0.97 | 6 | BAT2 | 2736172 | −0.91 |
1 | IL12RB2 | 7555183 | −0.99 | 6 | HLA-DOB | 2859579 | −0.99 |
1 | TGFBR3 | 1017956 | −0.94 | 6 | IL22RA2 | 13197049 | 0.92 |
1 | XCL1 | 6700487 | 0.91 | 6 | CCR6 | 1571878 | −0.96 |
1 | PTGS2 | 2745557 | 0.93 | 8 | DEFB1 | 2978873 | 0.98 |
1 | IRF6 | 2073486 | −0.93 | 8 | DEFB1 | 2977772 | 0.91 |
1 | NLRP3 | 12565738 | −0.92 | 8 | IKBKB | 3747811 | −0.95 |
1 | NLRP3 | 10754558 | 0.98 | 9 | PAX5 | 7031673 | −0.91 |
2 | IL1R2 | 13022757 | −0.93 | 10 | IL2RA | 10905668 | 0.98 |
2 | IL1R2 | 4850993 | −0.95 | 10 | ITGB1 | 10827164 | −0.95 |
2 | IL1R2 | 3218848 | 0.98 | 10 | CXCL12 | 10900030 | 0.96 |
2 | IL1R2 | 2110562 | −0.92 | 10 | MAPK8 | 12358297 | −0.95 |
2 | IL1RL1 | 10208293 | 0.95 | 10 | CHUK | 2230804 | −0.91 |
2 | IL18R1 | 1362348 | 0.92 | 11 | CD59 | 3181274 | −0.94 |
2 | CTLA4 | 231779 | −0.99 | 11 | CD44 | 112762 | −0.97 |
3 | IL5RA | 2290610 | −0.98 | 11 | IL10RA | 4252306 | 0.93 |
3 | CMTM8 | 4132830 | −0.96 | 11 | TIRAP | 8177352 | 0.98 |
3 | CMTM7 | 17029530 | −0.97 | 13 | IL17D | 1888001 | 0.94 |
3 | CD80 | 491407 | −1.00 | 13 | TNFRSF19 | 7338328 | −0.98 |
3 | CD80 | 2228017 | −0.97 | 16 | IL4R | 4787423 | 0.96 |
3 | CD80 | 2222631 | −0.93 | 17 | CSF3 | 2227321 | −0.95 |
3 | CD80 | 16829988 | −0.99 | 17 | MAP2K6 | 12946388 | −0.95 |
3 | CD86 | 2681411 | 0.97 | 21 | ITGB2 | 235326 | 0.99 |
3 | CD86 | 17203439 | 0.95 | 22 | MAPK1 | 743409 | −0.93 |
4 | TLR1 | 5743572 | 0.93 | 22 | MAPK1 | 2283792 | −0.98 |
4 | CXCL13 | 171388 | −0.94 | 22 | MAPK1 | 3788332 | −0.94 |