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. Author manuscript; available in PMC: 2010 Jun 9.
Published in final edited form as: Adv Protein Chem Struct Biol. 2009 Feb 26;75:107–141. doi: 10.1016/S0065-3233(07)75004-0

Figure 9.

Figure 9

Function prediction of alpha amylases. (a) The phylogenetic tree for Pdb structure 1bag from B. subtilis. (b) The functional binding pocket of alpha amylase on 1bag. (c) A matched binding surface on a different protein structure ( 1b2y from human, full sequence identity 22%) obtained by querying with the binding surface of 1bag (adapted from [11]).